Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0810
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.16 |dad3||DASH complex subunit Dad3|Schizosaccharomyces... 29 0.53
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 28 0.93
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa... 28 1.2
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 27 2.2
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 26 5.0
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.0
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 26 5.0
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 26 5.0
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 25 6.6
>SPAC14C4.16 |dad3||DASH complex subunit Dad3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 86
Score = 29.1 bits (62), Expect = 0.53
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 133 DMIWSPGNNFLQASAGLPDVIDLIYTL 53
DM+++P NN L + L + L+YTL
Sbjct: 33 DMVYNPSNNILDSLRDLEKEVGLVYTL 59
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 28.3 bits (60), Expect = 0.93
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +1
Query: 61 ILSRSHQEVQQMLAKNYYPGTKS 129
++SRS+ ++Q+ A+N++P T+S
Sbjct: 1472 VISRSNLDIQKEAARNFFPSTES 1494
>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 295 YFTNICX-TSISFSRLMWLYF*EFCRTISS 209
Y +N+C F+R W YF ++CR ++S
Sbjct: 161 YLSNMCPQVGDGFNRNYWAYFEDWCRRLTS 190
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 27.1 bits (57), Expect = 2.2
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Frame = +2
Query: 77 IRKSSRCLQKIITRGPNHICEW-----*DTVEYKIRQSS*TVAIRPANCRTYSPTKLSEI 241
IRK+ + LQ +I P H W + V K+ Q+ + NC L I
Sbjct: 260 IRKARKLLQSVIETNPKHASGWVAAARLEEVANKLSQAQSLILKGCENCSRSEDVWLEAI 319
Query: 242 *PHKSTEADTSXTD-ICKISGSIGSALDTEITDDELLNEEAL 364
H + EA + + K+ S+ L+ E +++ +++ +
Sbjct: 320 RLHPAAEAKVIIANAVKKLPKSVTLWLEAEKLENQAQHKKRI 361
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -2
Query: 338 HQLFLCLRHC-RYCHLFYKYLXH*YQLQSTYVAIFLRVL*DYKFDSLRGGLQQFKSFVVF 162
H++ L +C +Y L + + + I+ RVL F++L LQQF+ +VF
Sbjct: 363 HRILNILMYCSQYLPLKASTSKEAFSKTAAFANIYDRVLDFLDFEALIPLLQQFQVKLVF 422
Query: 161 YIQQCLTI 138
+++ L +
Sbjct: 423 FLKDVLPV 430
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 291 LQISVXLVSASVDLCGYISESFVGL*VRQFAGR 193
+ ++V L++ +V LCGYI+ V + + +GR
Sbjct: 167 ISLTVSLLTMTVFLCGYIAGPIVWAPLSELSGR 199
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 332 TDDELLNEEALKTIYALIKFTKXKVINRIKXSQPDKIHPMXEAYIKF 472
TD+ELL E AL+TIY + + +RI+ ++ + + + F
Sbjct: 883 TDNELLVECALETIYQVCALADDFMTSRIRQDLLPRLETLCQRWHLF 929
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -3
Query: 184 SSRALSYFIFNSVLPFTDMIWSPGNNFLQASAGLPDVIDLIYTLPSDPSATCSPKAFIW 8
S + L+YF +VL ++ + S N++ P L+ LP + C+PK FIW
Sbjct: 306 SPQVLNYFTAPNVLIWSAVCSS--NSWAAIYRSSP----LLAKLPDGSTEVCTPKNFIW 358
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 190 CNSSRALSYFIFNSVLPFTDMIWSPGNNFLQAS 92
C+ R L Y ++N LP P N + + S
Sbjct: 166 CDGVRGLEYAVYNYDLPSESTFCHPSNGYTEVS 198
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 439 NSPHXRSLYKVPPRISVEEMT 501
NSPH L K+ P ++ EE+T
Sbjct: 297 NSPHPPVLVKIAPDLNEEELT 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,853
Number of Sequences: 5004
Number of extensions: 44897
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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