Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0810
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0509 + 3792255-3792661,3792745-3792851,3792949-3793043,379... 36 0.026
06_02_0135 + 12188739-12189086,12189191-12189272,12189397-121895... 31 0.73
06_01_0408 - 2907333-2907550,2908339-2908761,2908852-2909023,290... 29 2.2
04_04_1419 - 33433463-33436009 29 2.9
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 28 5.1
07_01_0084 + 657846-658538,660652-661920 28 6.8
04_04_1420 + 33441260-33443704 28 6.8
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782... 27 8.9
03_02_0229 + 6594931-6595030,6595573-6595826,6595935-6596061,659... 27 8.9
>07_01_0509 +
3792255-3792661,3792745-3792851,3792949-3793043,
3793169-3793245,3793334-3793454,3793533-3793592,
3793672-3793812
Length = 335
Score = 35.9 bits (79), Expect = 0.026
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 24 GLQVAEGSDGNVYIKSITSGSPADACKKLLPGDQIISVN 140
GL+ A+G DG YI++I G+ AD K GD++++ +
Sbjct: 98 GLKFAKGRDGGTYIEAILPGAAADQTGKFEVGDKVLATS 136
>06_02_0135 +
12188739-12189086,12189191-12189272,12189397-12189527,
12189626-12189712,12189794-12189872,12190520-12190608,
12190765-12190806,12191030-12191149,12191819-12191968,
12192066-12192137,12192293-12192541
Length = 482
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 39 EGSDGNVYIKSITSGSPADACKKLLPGDQIISVNGKTLLNIKYDKALELLQS-APQTVEL 215
E S G + + G PAD L GD+++ ++GK++ + + A + L+ TV++
Sbjct: 210 EPSSGRLLVMDCIEGGPADRAG-LHGGDELVEIDGKSVSGLDGEAAAQRLRGRVGTTVKV 268
Query: 216 IVLQNSQ 236
VL ++
Sbjct: 269 KVLDGTE 275
>06_01_0408 -
2907333-2907550,2908339-2908761,2908852-2909023,
2909059-2909400
Length = 384
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -3
Query: 232 EFCRTISSTVCGADCNSSRALSYFIFNSV--LPFTDMIWSPGNNFLQASAGLPDVIDLI 62
++ + ISS+VCG +C S A S F+F + M++ G + QAS ++D I
Sbjct: 159 QWFQQISSSVCGQNCKSYLANSLFVFGEFGGNDYNAMLFG-GYSADQASTYTSQIVDTI 216
>04_04_1419 - 33433463-33436009
Length = 848
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 3 RXQMNALGLQVAEGSDGNVYIKSITSGSPADACKKLLPGDQIIS 134
R ++ G V + DG V + TSG+PAD + L G+ ++S
Sbjct: 96 RAELRKDGSLVLQDYDGRVVWSTNTSGTPADRAQLLDTGNLVVS 139
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +3
Query: 48 DGNVYIKSI-TSGSPADACKKLLPGDQIISVNGKTLLNIKYD-KALELLQSAPQTVELIV 221
DG+ +K + TS SP + +L+PG ++ K N D + L+ QT L+
Sbjct: 142 DGHNIVKFVVTSSSPKKSLVQLVPGTEVAVAPKKRRENSSQDVQKQSALKEEAQTKALLR 201
Query: 222 LQNS-QKYSHISRLK 263
+Q + +KY H + K
Sbjct: 202 VQAADRKYVHKFKYK 216
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 145 LPFTDMIWSPGNNFLQASAGLPDVIDLIYTLPS 47
+P++ PGN+F+ G PD +L Y+ S
Sbjct: 367 IPYSVKFRMPGNSFVPTGNGAPDTRNLYYSFDS 399
>04_04_1420 + 33441260-33443704
Length = 814
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 3 RXQMNALGLQVAEGSDGNVYIKSITSGSPADACKKLLPGDQIIS 134
R ++ G V + DG V + TSG+PAD + L G+ +++
Sbjct: 96 RAELRRDGSLVLQDYDGRVVWSTNTSGTPADRAQLLDTGNLVVA 139
>11_02_0056 +
7828453-7828717,7829425-7829427,7829658-7829912,
7829997-7830124,7831063-7831207,7832178-7832275,
7833253-7833395,7835119-7835239,7835492-7835584,
7835712-7835828
Length = 455
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 57 VYIKSITSGSPADACKKLLPGDQIISVNGKTLLNIK 164
V + +T GSPA+ PGD ++ +GK + +IK
Sbjct: 382 VLVPMVTPGSPAEHAG-FRPGDVVVEFDGKLVESIK 416
>03_02_0229 +
6594931-6595030,6595573-6595826,6595935-6596061,
6596197-6596470,6596616-6596748,6596898-6596984,
6597067-6597186
Length = 364
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 33 VAEGSDGNVYIKSITSGSPADACKKLLP 116
+ EGS G +Y +TSG P A KKL P
Sbjct: 79 IGEGSYGRIYRAVLTSGEPV-AIKKLDP 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,368,467
Number of Sequences: 37544
Number of extensions: 259242
Number of successful extensions: 689
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -