Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0810
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55480.1 68414.m06346 expressed protein                             34   0.065
At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ...    33   0.20 
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ...    32   0.35 
At3g03380.1 68416.m00336 DegP protease, putative contains simila...    31   0.80 
At5g46390.2 68418.m05710 peptidase S41 family protein similar to...    29   1.9  
At5g46390.1 68418.m05709 peptidase S41 family protein similar to...    29   1.9  
At5g27660.1 68418.m03315 DegP protease, putative similar to Seri...    29   1.9  
At1g66750.1 68414.m07587 cell division protein kinase, putative ...    27   7.5  

>At1g55480.1 68414.m06346 expressed protein
          Length = 335

 Score = 34.3 bits (75), Expect = 0.065
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 24  GLQVAEGSDGNVYIKSITSGSPADACKKLLPGDQIISVN 140
           GL+  +G DG  YI +I  G  AD   K   GD++I+ +
Sbjct: 98  GLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATS 136


>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
           subunit-related contains similarity to Swiss-Prot:P80387
           5'-AMP-activated protein kinase, beta-1 subunit (AMPK
           beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
          Length = 591

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +3

Query: 21  LGLQVAEGSDGNVYIKSITSGSPADACKKLLPGDQIISV---NGKTLLNIK 164
           LG++ A  +DG +++ +I  GS A+  + ++ GD +      +G TL+ IK
Sbjct: 85  LGIRFALSADGKIFVHAIKKGSNAEKARIIMVGDTLKKASDSSGGTLVEIK 135


>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain; ESTs gb|T44428 and gb|AA395440 come from this
           gene
          Length = 1218

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 290 KISGSIGSALDTEITDDELLNEEALKTIYALIKFTKXKVINRIKXSQPDKIHPMXEAYIK 469
           K SG++GS L  E      + E+ ++   A++KF + K+ + I   + + I    E  IK
Sbjct: 669 KKSGNVGSKLTIEEATFRDIQEKKMELYQAIVKFEEGKLDDSIVKERTEHIQSGLEELIK 728

Query: 470 FLRE 481
            L E
Sbjct: 729 NLNE 732


>At3g03380.1 68416.m00336 DegP protease, putative contains
           similarity to degP GI:2623992 from [Bradyrhizobium
           japonicum]
          Length = 1097

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 42  GSDGNVYIKSITSGSPADACKKLLPGDQIISVNGKTL 152
           G  G + + S+    PAD  K L PGD ++ VNG  L
Sbjct: 299 GETGMLVVDSVVPSGPAD--KHLEPGDVLVRVNGTVL 333


>At5g46390.2 68418.m05710 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 489

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
 Frame = +3

Query: 3   RXQMNALGLQVAEGSDGNVYIKSITSGSPADACKKLL---PGDQIISVNGKTLLNIKYDK 173
           +  +  +G+ + E SDG   +K    G   D+   +     GD+I++VNG  +      +
Sbjct: 194 KYDITGIGINLREVSDGGGNVKLKVLGLVLDSAADIAGVKQGDEILAVNGMDVSGKSSFE 253

Query: 174 ALELLQSAPQTVELIVLQNSQKYSHISRLKL 266
              LLQ   +T  ++ +++  K   +  LK+
Sbjct: 254 VSSLLQGPSKTFVVLKVKHG-KCGPVKSLKI 283


>At5g46390.1 68418.m05709 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 428

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
 Frame = +3

Query: 3   RXQMNALGLQVAEGSDGNVYIKSITSGSPADACKKLL---PGDQIISVNGKTLLNIKYDK 173
           +  +  +G+ + E SDG   +K    G   D+   +     GD+I++VNG  +      +
Sbjct: 194 KYDITGIGINLREVSDGGGNVKLKVLGLVLDSAADIAGVKQGDEILAVNGMDVSGKSSFE 253

Query: 174 ALELLQSAPQTVELIVLQNSQKYSHISRLKL 266
              LLQ   +T  ++ +++  K   +  LK+
Sbjct: 254 VSSLLQGPSKTFVVLKVKHG-KCGPVKSLKI 283


>At5g27660.1 68418.m03315 DegP protease, putative similar to Serine
           protease HTRA2, mitochondrial precursor (High
           temperature requirement protein A2) (HtrA2) (Omi
           stress-regulated endoprotease) (Serine proteinase OMI)
           (SP:O43464) {Homo sapiens}
          Length = 459

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 57  VYIKSITSGSPADACKKLLPGDQIISVNGKTLLNIKYDKALELLQ 191
           V + ++  GSPAD      PGD ++  +GK ++ I  D+  + +Q
Sbjct: 392 VLVPTVIPGSPADRAG-FKPGDVVVRFDGKPVIEIMDDRVGKRMQ 435


>At1g66750.1 68414.m07587 cell division protein kinase, putative
           similar to cell division protein kinase 7 [Homo sapiens]
           SWISS-PROT:P50613
          Length = 348

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = +3

Query: 33  VAEGSDGNVYIKSITSGSPADACKKLLPGDQIISVNGKTLLNIKYDKALELLQSAPQTVE 212
           + EG+ G VY  + T      A KK+  G+Q   VN   L  IK  K L    + P  VE
Sbjct: 19  LGEGTYGVVYKATDTKTGKTVAVKKIRLGNQKEGVNFTALREIKLLKEL----NHPHIVE 74

Query: 213 LI 218
           LI
Sbjct: 75  LI 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,862,090
Number of Sequences: 28952
Number of extensions: 219952
Number of successful extensions: 614
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)