Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0808
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    29   0.43 
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    25   5.3  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   5.3  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   9.2  

>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 257 VKLCLMHLRGSLHTAEGVSXSXXE*ISQVAPSPSKVTQAGQQA 129
           V +C+MH+RG+  T + +S    + + +VA   S   +A  Q+
Sbjct: 538 VPICIMHMRGTPETMKALSIYEKDIVEEVAVELSSRVEAAVQS 580


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 38  VQTTVKKIHAYSXHLFALRTL 100
           ++  VKKIH ++  +F LRTL
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTL 83


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 270  LHKLSETLFDAFERLLTHSGGG 205
            +H+ S  LFD F+RLL    GG
Sbjct: 1080 IHQPSAVLFDQFDRLLLLQKGG 1101


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 221 HTAEGVSXSXXE*ISQVAPSPSKVTQA 141
           HT   V  S  E +SQ  PSP K+  +
Sbjct: 252 HTRSTVPTSNVEPVSQPQPSPDKIVSS 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,030
Number of Sequences: 5004
Number of extensions: 26931
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)