Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0808
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    29   2.1  
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z74029-7|CAA98430.2|  280|Caenorhabditis elegans Hypothetical pr...    27   8.3  
X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.    27   8.3  
U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory ...    27   8.3  
U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.        27   8.3  

>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 37  GTDYCEKNPCIQXPLVCPKNTEHRARHAGKCA-CCPACVTLLGEGATCEIYS 189
           G D C    C   P  CP N     R +G C  CCP   T +  G  C++ S
Sbjct: 530 GVD-CNNGACCPLP-TCPNNIASSQRCSGGCTNCCPVGQTCM-NGGCCDLPS 578


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 91  KNTEHRARHAGKCACCPACVTLLGEGA 171
           K T HR +H    ACCP C  ++   A
Sbjct: 147 KGTWHRVKHVVFVACCPPCCCIIQRSA 173


>Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical
           protein C46C2.6a protein.
          Length = 195

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 85  CPKNTEHRARHAGKCACCPACVTLLGEGATC-EIYSXXLXXTPSAVCK-EPLKC 240
           CP + +   +H+G+CA   AC+     G  C +++S  +  T    CK +P+ C
Sbjct: 60  CPSDYDFIRQHSGRCADGTACIPDSSFGEPCIKLFSYQM--TKKFCCKSDPIDC 111


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
           protein F48E3.8a protein.
          Length = 2427

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
 Frame = +1

Query: 7   CVXAYGALVCGTDYCEKNPCIQXPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCEIY 186
           C    GAL  GT     +  IQ  + CP    +  R AG       C+T+   G  C+  
Sbjct: 59  CQCVKGALNTGTTCIASSTAIQTSVACPAGQTY-IREAG------VCMTVQQPGEPCQYS 111

Query: 187 SXXLXXTPSAVC-KEPLKCI 243
                  P A C K   +C+
Sbjct: 112 QQCSALEPGAYCLKMRCECV 131


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
 Frame = +1

Query: 7   CVXAYGALVCGTDYCEKNPCIQXPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCEIY 186
           C    GAL  GT     +  IQ  + CP    +  R AG       C+T+   G  C+  
Sbjct: 59  CQCVKGALNTGTTCIASSTAIQTSVACPAGQTY-IREAG------VCMTVQQPGEPCQYS 111

Query: 187 SXXLXXTPSAVC-KEPLKCI 243
                  P A C K   +C+
Sbjct: 112 QQCSALEPGAYCLKMRCECV 131


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
 Frame = +1

Query: 25  ALVCGTDYCEKNPCIQXPLVCPKNTEHRARHAGK---CACCPACVTLLGEGATCEIYSXX 195
           A +C   + +KN        CP +        G      C P C  L      CE     
Sbjct: 585 ACICAPGFVKKNGKCVTLASCPDHDHTNITCLGTQEYTDCMPKCQQLCSGAQQCETGMEI 644

Query: 196 LXXTPSAVCKEPLK 237
              TP  VC+   K
Sbjct: 645 AMCTPGCVCRPNYK 658


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
 Frame = +1

Query: 25  ALVCGTDYCEKNPCIQXPLVCPKNTEHRARHAGK---CACCPACVTLLGEGATCEIYSXX 195
           A +C   + +KN        CP +        G      C P C  L      CE     
Sbjct: 650 ACICAPGFVKKNGKCVTLASCPDHDHTNITCLGTQEYTDCMPKCQQLCSGAQQCETGMEI 709

Query: 196 LXXTPSAVCKEPLK 237
              TP  VC+   K
Sbjct: 710 AMCTPGCVCRPNYK 723


>Z74029-7|CAA98430.2|  280|Caenorhabditis elegans Hypothetical
           protein C45B11.2 protein.
          Length = 280

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 278 ENDYTSLVKLCLMHLRGSLHTAEGVSXSXXE*ISQVAPSP 159
           +ND  S+ KLCL HL+ S   A  +  +  + IS  A SP
Sbjct: 18  DNDRNSIAKLCLSHLKKS---ASIMKTTYSDCISNKAESP 54


>X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.
          Length = 498

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 85  CPKNTEHRARHAGKCACCPA--CVTLLGEGATCEIYSXXLXXTPS 213
           C K+ +    H   C C P+  CV   G+    EI++     TP+
Sbjct: 82  CTKDNKTAKGHRSPCICAPSRFCVAYNGKTPPIEIWTYLQGGTPT 126


>U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory
           abnormality protein4 protein.
          Length = 768

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 85  CPKNTEHRARHAGKCACCPA--CVTLLGEGATCEIYSXXLXXTPS 213
           C K+ +    H   C C P+  CV   G+    EI++     TP+
Sbjct: 352 CTKDNKTAKGHRSPCICAPSRFCVAYNGKTPPIEIWTYLQGGTPT 396


>U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.
          Length = 768

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 85  CPKNTEHRARHAGKCACCPA--CVTLLGEGATCEIYSXXLXXTPS 213
           C K+ +    H   C C P+  CV   G+    EI++     TP+
Sbjct: 352 CTKDNKTAKGHRSPCICAPSRFCVAYNGKTPPIEIWTYLQGGTPT 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,988,463
Number of Sequences: 27780
Number of extensions: 165762
Number of successful extensions: 335
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)