Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0808
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   5.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 290 NIXLQYFYXDL-FXIXFVYGLKLXIICTV 373
           N+ +   Y D  + I F Y + L ++CTV
Sbjct: 804 NLLVCNSYVDASYMIAFAYPIMLIVVCTV 832


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +1

Query: 88  PKNTEHRARHAGKCACCPACVTLLGEGATCEIYSXXLXXTPSAV 219
           P N    A  A KCA       L  E A CE     +  +P  V
Sbjct: 153 PMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDLV 196


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 106 RARHAGKCACCPACVTLLGEGAT 174
           + RH     CC  C  L G G++
Sbjct: 3   KGRHVVMSCCCWCCDNLGGPGSS 25


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 341 YGLKLXIICTVVNXRHLG 394
           Y + L   CT++  RHLG
Sbjct: 208 YKMGLESTCTLILGRHLG 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,618
Number of Sequences: 438
Number of extensions: 1949
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)