Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0808
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11620.1 68418.m01359 SWIM zinc finger family protein / mitog...    29   2.6  
At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin ...    27   5.9  
At5g15660.1 68418.m01832 F-box family protein contains Pfam PF00...    27   7.8  

>At5g11620.1 68418.m01359 SWIM zinc finger family protein /
           mitogen-activated protein kinase kinase kinase
           (MAPKKK)-related contains weak similarity to
           Swiss-Prot:P53349 mitogen-activated protein kinase
           kinase kinase 1 (MAPK/ERK kinase kinase 1, MEK kinase 1,
           MEKK 1) [Mus musculus]; contains Pfam profile PF04434:
           SWIM zinc finger
          Length = 273

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 166 GATCEIYSXXLXXTPSAVCKEPLKCIKQSFTKLV 267
           GATC +Y+  L  TP+  C +  K  K     L+
Sbjct: 53  GATCNVYTVTLMATPTCTCPDRKKPCKHILFVLI 86


>At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin
           family protein low similarity to Ser/Thr protein kinase
           [Zea mays] GI:2598067; contains Pfam profile PF01453:
           Lectin (probable mannose binding)
          Length = 443

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 121 GKCACCPACVTLLGEGATCEIYS 189
           G+C  CP+ + LLG   TC+I S
Sbjct: 330 GQCNACPSDIGLLGWDETCKIPS 352


>At5g15660.1 68418.m01832 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 438

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 263 SLVKLCLMHLRGSLHTAEG 207
           SL++L  +H+RGS HTA G
Sbjct: 383 SLLRLDNLHIRGSTHTATG 401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,106,611
Number of Sequences: 28952
Number of extensions: 142479
Number of successful extensions: 289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)