Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0806
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   2.4  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   9.6  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   9.6  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    25   9.6  

>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 516 WRHFLGAITDNXPSEDSRDSTDSAVQPSGK 427
           W H  G IT+N  ++D+++   S V    K
Sbjct: 128 WSHIPGMITENQTNDDAKEVNGSDVDEKSK 157


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +1

Query: 13  LKQVKKVFKT**ASLQIYNNKMSLIPWLXDYEIERPRRLMDQHFGLGLTP---EDFLSAA 183
           L+QVK++ +     L++    +  + WL D    + +    +H  L   P    DFL  +
Sbjct: 149 LEQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSLVTIPILYLDFLQFS 208

Query: 184 AGPLVSREYY 213
              +  R YY
Sbjct: 209 FPVVFQRSYY 218


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 433 GWLYG*ICGVPAVFRWXVVC 492
           GWL   ICG+   F W  +C
Sbjct: 418 GWLLS-ICGLSTTFIWGSIC 436


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 384 ISXVTYRVNSLVATLCRMAVRLNLWSPGCL 473
           +S   YR   ++ T  +  V +++WS GC+
Sbjct: 174 VSTRYYRAPEIMLTWQKYNVEVDIWSAGCI 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,711
Number of Sequences: 5004
Number of extensions: 36988
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)