Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0806
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0478 + 8775892-8776377 40 0.002
03_02_0485 - 8808139-8808618 36 0.021
03_02_0484 + 8805053-8805538 36 0.021
03_02_0483 - 8804021-8804485 36 0.021
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 34 0.064
01_01_0229 - 1943473-1943922 34 0.085
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 33 0.11
01_01_0231 + 1951047-1951499 33 0.11
01_01_0227 + 1933247-1933699 33 0.11
12_02_0136 + 14109557-14109661,14109742-14109804 33 0.20
05_03_0545 - 15244647-15245147,15245342-15245635 31 0.45
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 30 1.0
07_01_1127 + 10456895-10457388,10457488-10458112 29 2.4
04_01_0252 - 3329712-3331061 29 3.2
03_01_0491 + 3720842-3720958,3721904-3723109 28 4.2
05_06_0150 - 25994562-25995980 28 5.6
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 27 7.4
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 27 9.8
>03_02_0478 + 8775892-8776377
Length = 161
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +2
Query: 296 DVQHFXPEEISVKTADGYIV-VEGKH----EEKXDQXGYISR---QFTRRYALPDGCTAE 451
DV EE+ V+ DG I+ + G+ EEK DQ + R +F RR+ LPD E
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 452 SVESRLSSDGXLSVIAPRK 508
+++ + +G L+V P++
Sbjct: 130 QIKASM-ENGVLTVTVPKE 147
>03_02_0485 - 8808139-8808618
Length = 159
Score = 35.9 bits (79), Expect = 0.021
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +2
Query: 296 DVQHFXPEEISVKTADGYIV-VEGKH----EEKXDQXGYISR---QFTRRYALPDGCTAE 451
DV EE+ V+ DG I+ + G+ EEK D+ + R +F RR+ LP+ E
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 452 SVESRLSSDGXLSVIAPRK 508
+++ + +G L+V P++
Sbjct: 128 QIKASM-ENGVLTVTVPKE 145
>03_02_0484 + 8805053-8805538
Length = 161
Score = 35.9 bits (79), Expect = 0.021
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +2
Query: 296 DVQHFXPEEISVKTADGYIV-VEGKH----EEKXDQXGYISR---QFTRRYALPDGCTAE 451
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LP+ E
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 452 SVESRLSSDGXLSVIAPRK 508
+++ + +G L+V P++
Sbjct: 130 QIKASM-ENGVLTVTVPKE 147
>03_02_0483 - 8804021-8804485
Length = 154
Score = 35.9 bits (79), Expect = 0.021
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +2
Query: 296 DVQHFXPEEISVKTADGYIV-VEGKH----EEKXDQXGYISR---QFTRRYALPDGCTAE 451
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LP+ E
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 452 SVESRLSSDGXLSVIAPRK 508
+++ + +G L+V P++
Sbjct: 123 QIKASM-ENGVLTVTVPKE 140
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 34.3 bits (75), Expect = 0.064
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Frame = +2
Query: 296 DVQHFXPEEISVKTADGYI-VVEGKH----EEKXDQXGYISR---QFTRRYALPDGCTAE 451
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LP+ +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 452 SVESRLSSDGXLSVIAPR 505
V++ L +G L+V P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 33.9 bits (74), Expect = 0.085
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Frame = +2
Query: 296 DVQHFXPEEISVKTADGYI-VVEGKH----EEKXDQXGYISR---QFTRRYALPDGCTAE 451
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LP+ +
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 452 SVESRLSSDGXLSVIAPR 505
V++ + +G L+V P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 33.5 bits (73), Expect = 0.11
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Frame = +2
Query: 248 PWPSXKSDXXKFQVNLDVQHFXPEEISVKTADGYIVVEGKHEEKXDQXGYIS-------- 403
PW + D + ++ D+ EE+ V D +V+ G+H+++ + S
Sbjct: 134 PWDVMEDDK-EVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKER 192
Query: 404 --RQFTRRYALPDGCTAESVESRLSSDGXLSVIAPR 505
+ R ALPD C V + L +G L V P+
Sbjct: 193 SVSSYDMRLALPDECDKSKVRAEL-KNGVLLVTVPK 227
>01_01_0231 + 1951047-1951499
Length = 150
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Frame = +2
Query: 296 DVQHFXPEEISVKTADGYI-VVEGKH----EEKXDQXGYISR---QFTRRYALPDGCTAE 451
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LP+ +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 452 SVESRLSSDGXLSVIAPR 505
V++ + +G L+V P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135
>01_01_0227 + 1933247-1933699
Length = 150
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 356 VEGKHEEKXDQXGYISRQFTRRYALPDGCTAESVESRLSSDGXLSVIAPRK 508
V+GK++E+ S +F RR+ LP G + V + + +G L+V P++
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>12_02_0136 + 14109557-14109661,14109742-14109804
Length = 55
Score = 32.7 bits (71), Expect = 0.20
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 189 PPCEQRILPPVGHLAAAARD 248
PPC +R+LPP+ HL AR+
Sbjct: 8 PPCRRRLLPPIAHLLPHARE 27
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 31.5 bits (68), Expect = 0.45
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 371 RVCLQPRCSRPPF*QRFLPGRNAGR 297
R CLQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>10_08_0141 + 15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +2
Query: 296 DVQHFXPEEISVKTADGY--IVVEGKHEEKXDQXGYISRQFTRRYALPDGCTAESVESRL 469
D+Q + E I V+ +VV G+ + + +F ++ +PDGC +++++RL
Sbjct: 941 DIQGYKKEHIKVQLVRSRRRLVVSGECPVAGETNRW--SRFRLQFPVPDGCDLKAIQARL 998
Query: 470 SSDGXLSVIAPRKCRQQ 520
DG + V P QQ
Sbjct: 999 -HDGVIRVTLPGVKPQQ 1014
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 371 RVCLQPRCSRPPF*QRFLPGRNAGR 297
R CLQPR SRPP ++F R+ R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 371 RVCLQPRCSRPPF*QRFLPGRNAGR 297
R CLQPR +RPP ++F R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 201 AHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 103
A G GC K+F S+ +A+ H A +L F+
Sbjct: 391 ADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>05_06_0150 - 25994562-25995980
Length = 472
Score = 27.9 bits (59), Expect = 5.6
Identities = 26/93 (27%), Positives = 35/93 (37%)
Frame = -2
Query: 402 DM*PX*SXFSSCLPSTTM*PSAVLTEISSGXKCWTSRFTWNLXXSLXXLGQGLEPRQQGD 223
D P S C S P+A L E++ G + RF W + EP +
Sbjct: 261 DAQPQRSVVFLCFGSQGAFPAAQLKELAHGLESSGHRFLWTVRSPPEEQSTSPEPDLERL 320
Query: 222 PRAVVFSAHKGAGCSTEKIFRSQPQAEMLIHEA 124
A KG G + PQAE++ HEA
Sbjct: 321 LPAGFLERTKGRGMVVKNWV---PQAEVVQHEA 350
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 27.5 bits (58), Expect = 7.4
Identities = 28/78 (35%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = -3
Query: 374 PRVCLQPRCSRPPF*QRFLPGRNAGR-PGLLGTXPXHFXXWAKVSSRG-SKVTHGR*YSL 201
PR L PR RPP PG GR G T A V +G KV G
Sbjct: 98 PRPPLPPRPPRPPLPPLREPGEGGGRGDGRGATGTGSSSAAAAVDRKGKKKVDEG----- 152
Query: 200 LTRGPAAALRKSSGVSPK 147
R P ALRKS + K
Sbjct: 153 -DRDPEQALRKSGPLEGK 169
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +2
Query: 248 PWPSXKSDXXKFQVNLDVQHFXPEEISVKTADGYIVVEGKHEEKXDQXGYISRQFTRRYA 427
PW + + D + + +++H+ P+ + ++ D + + + E + GY SR R
Sbjct: 116 PWDAMRWDSRRRLIIREIRHWDPDLVCLQEVDRFRDIATEMENR----GYQSRFKGRTGD 171
Query: 428 LPDGC 442
DGC
Sbjct: 172 AKDGC 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,029,251
Number of Sequences: 37544
Number of extensions: 306145
Number of successful extensions: 767
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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