Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0805
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    28   2.5  
At1g19220.1 68414.m02392 transcriptional factor B3 family protei...    27   5.9  
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    27   7.7  

>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
 Frame = +1

Query: 298 DVQHFAPEEISVXTADGYIV-VEGK----HEDKXDQHGYISR---QFTRRYALPE 438
           D+     EE+ V   DG I+ + G+    +E+K D+   + R   +FTRR+ LPE
Sbjct: 66  DLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPE 120


>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profile: PF02309 AUX/IAA family
          Length = 1086

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 198 EQRILPPVACSLMPRLETLLQHQN 269
           +Q+ +PPV+ SL P+L  L Q Q+
Sbjct: 659 QQQSIPPVSSSLQPQLSALQQTQS 682


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 319 EEISVXTADGYIVVEGKHEDKXDQHGYISR---QFTRRYALPE 438
           EE SV    G   VE   EDK D    + R   QFTRR+ LPE
Sbjct: 76  EEDSVLKISGERHVE--KEDKNDTWHRVERSSGQFTRRFRLPE 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,020,773
Number of Sequences: 28952
Number of extensions: 136160
Number of successful extensions: 230
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)