Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0802
         (369 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    20   7.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   7.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   7.0  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    20   9.2  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = +3

Query: 12  RLRPN--SLKKHRRRRKDP 62
           ++RP   S ++HR+  KDP
Sbjct: 252 KMRPKRQSSRRHRKNLKDP 270


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 168 SWYSFSYGGLSNNTW 124
           SW+ +  G L  N W
Sbjct: 592 SWFRYGNGALMINQW 606


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 168 SWYSFSYGGLSNNTW 124
           SW+ +  G L  N W
Sbjct: 592 SWFRYGNGALMINQW 606


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 186 SLYXGTSWYSFSYGG 142
           S+Y GT W + S  G
Sbjct: 85  SIYVGTVWINTSING 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,676
Number of Sequences: 336
Number of extensions: 1528
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7616520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)