Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0802
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    51   5e-08
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    51   5e-08
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    31   0.057
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    27   0.70 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.2  
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    26   2.1  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   2.8  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   3.7  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    25   4.9  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   4.9  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    24   8.6  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 51.2 bits (117), Expect = 5e-08
 Identities = 22/55 (40%), Positives = 39/55 (70%)
 Frame = +2

Query: 104 VRDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
           V+DK  +  +FDK   +++ +EVP +K I+ +V+ +R+K+ GSLAR A+ DL ++
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66



 Score = 27.5 bits (58), Expect = 0.70
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 256 LREKGLIKQVVQHHGQVIYXRA 321
           L E+G+I++V QH  Q IY RA
Sbjct: 63  LAERGVIQKVDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 51.2 bits (117), Expect = 5e-08
 Identities = 22/55 (40%), Positives = 39/55 (70%)
 Frame = +2

Query: 104 VRDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
           V+DK  +  +FDK   +++ +EVP +K I+ +V+ +R+K+ GSLAR A+ DL ++
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66



 Score = 25.8 bits (54), Expect = 2.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 256 LREKGLIKQVVQHHGQVIYXR 318
           L E+G+I++V QH  Q IY R
Sbjct: 63  LAERGVIQKVDQHSKQAIYTR 83


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 31.1 bits (67), Expect = 0.057
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 159  SFSYGGLSNNTWLFNLSRTXPXDHFFFXALPPP 61
            SF YG L NN++L  +S +   ++ F+   PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 110 DKLNNQVLFDKPPYEKLYQEVPQY--KLITPAVVSERLKVRGSLARRALIDLGKKV 271
           D   N++L    P    Y E P Y  K  TP + +E      S  R  L DLG++V
Sbjct: 90  DIFQNKLLNGSIPVNFSYPENPLYFVKHWTPVIKAENADQLSSSGRIELFDLGRQV 145


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 33  KKHRRRRKDPVAAKPRRRSGPKXKFVTS*TTRC 131
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 123 LFNLSRTXPXDHFFFXALPPPDP 55
           LF   R  P DH+F    PP +P
Sbjct: 113 LFKYLRCEPEDHYFLLTEPPLNP 135


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 164 GTVSHMGVYQTTPGCSTCHELXLXTTSSSXLCRHRILPSSSV 39
           GT+ +M  YQ TP     HE    T SS  L  H + PS+ +
Sbjct: 149 GTL-YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 351 VYATGSSPLGRTRVDHLPMVLDYLFDETFFPKSMS 247
           VY T   P GR+   +    L++ F   FFP  ++
Sbjct: 262 VYLTYDVPYGRSLYYYTSCALEFRFTNEFFPMDVT 296


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 12  RLRPNSLKKHRRRRKDPVAAKPRRRSGPKXKFVTS*TTRCCLINPHMRN 158
           R  PNS+K+ +R  K P++     +S P+   +T   +R   +   +RN
Sbjct: 150 RTTPNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRN 195


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 324 GRTRVDHLPMVLDYLFDETFFPKSMSALLAREPRTFNLS 208
           G TR+D L  + +Y+  E   PK     L ++ + + +S
Sbjct: 139 GNTRLDLLNQLSEYISPEILLPKRRLEHLLQQAKDYQVS 177


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 123 LFNLSRTXPXDHFFFXALPP 64
           L+N++   P DHF F  + P
Sbjct: 113 LYNITLVSPRDHFLFTPMLP 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,245
Number of Sequences: 5004
Number of extensions: 25125
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)