Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0802
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 73 7e-14
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 73 7e-14
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 57 5e-09
10_01_0146 - 1719997-1720386,1721498-1721515 29 0.86
12_02_0219 + 15822050-15824896 29 1.1
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 28 2.6
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 27 3.5
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 27 3.5
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 27 4.6
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 27 6.1
07_03_1000 - 23220878-23221821,23222164-23223001 27 6.1
04_04_1699 + 35462160-35462555,35463114-35463196,35463317-354633... 27 6.1
09_04_0721 + 19725695-19725697,19725793-19725859,19725944-197260... 26 8.1
01_06_0968 + 33466574-33466607,33467087-33467115,33467438-334675... 26 8.1
01_01_0014 + 84379-84600,84737-84830,84935-85086,85212-85299,853... 26 8.1
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 72.9 bits (171), Expect = 7e-14
Identities = 32/51 (62%), Positives = 43/51 (84%)
Frame = +2
Query: 107 RDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDL 259
++K+NN VLFD+ Y+KL EVP+YK ITP+V+SERL++ GSLARRA+ DL
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDL 84
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYXRAT 324
L ++GLI+ V H Q IY RAT
Sbjct: 84 LMDRGLIRMVSVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 72.9 bits (171), Expect = 7e-14
Identities = 32/51 (62%), Positives = 43/51 (84%)
Frame = +2
Query: 107 RDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDL 259
++K+NN VLFD+ Y+KL EVP+YK ITP+V+SERL++ GSLARRA+ DL
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDL 84
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYXRAT 324
++ + L +GLI+ V H Q IY RAT
Sbjct: 79 RAINDLMTRGLIRMVSVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 56.8 bits (131), Expect = 5e-09
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +2
Query: 107 RDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLK 220
++K+NN VLFDK Y+KL EVP+YK ITP+V+SERL+
Sbjct: 968 KEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 29.5 bits (63), Expect = 0.86
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 3 RTRRLRPNSLKKHRRRRKDPVAAKPRRRS 89
R ++P+ + RRRR +P +PRRR+
Sbjct: 77 RAAEMQPDDGGQRRRRRSEPATTQPRRRA 105
>12_02_0219 + 15822050-15824896
Length = 948
Score = 29.1 bits (62), Expect = 1.1
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = -1
Query: 360 ISIVYATGSS--PLGRTRVDHLPMVLDYL---FD-ETFFPKSMSALLAREPRTFNLSDTT 199
+ + YA S PL T D + + YL FD E K + L +EP T N+ DTT
Sbjct: 185 VVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEKLAGKEPMTVNIYDTT 244
Query: 198 A-GVISLYXGTS 166
+I +Y ++
Sbjct: 245 GESMIRMYGSSN 256
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 27.9 bits (59), Expect = 2.6
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2
Query: 104 VRDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVS 274
V+D + L DKP YE L P + L+ S+ + VR + A L DL K VS
Sbjct: 187 VKDSVKEDKLRDKPGYEHLND--PLHVLVEAEFPSDIVDVRLNQAVAILEDLLKPVS 241
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 27.5 bits (58), Expect = 3.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 294 PWAGDLXACDQGAMI 338
PWAGDL + DQG+++
Sbjct: 581 PWAGDLSSRDQGSLV 595
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 164 QEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSN 280
Q +P Y L A V +K+RG L GKK+S N
Sbjct: 1838 QTIPHYYLTVDARVDNLIKLRGELNPLQESSGGKKISIN 1876
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -2
Query: 269 PFSLSR*VLFXPGNLGPLTFQIRQQV*LACTXGLPGTVSHMGVYQTTPGCST 114
P+S S+ + PG++ P ++ Q G P T G Y G ST
Sbjct: 540 PYSASKPYQYTPGSVAPASYNSNQFKVAYGGPGAPPTAGGYGSYNDAAGQST 591
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 247 THRLREKGLIKQVVQHHG 300
TH++R + LI+QV+QH G
Sbjct: 1455 THKMRAEHLIRQVLQHLG 1472
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 227 LGPLTFQIRQQV*LACTXGLPGTVSHMGVYQTTPGC 120
L P T+Q+ V T P H G + TPGC
Sbjct: 323 LEPKTYQVMSNVINDVTSLFPDGFYHAGADEVTPGC 358
>04_04_1699 +
35462160-35462555,35463114-35463196,35463317-35463378,
35463745-35463806,35463932-35463991,35464079-35464111,
35464196-35464261,35464349-35464393
Length = 268
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 9 RRLRPNSLKKHRRRRKDPVAAKPRRRSGP 95
R+ P KHRR R D A PR+R P
Sbjct: 31 RQRPPPGPTKHRRLRHDADAQPPRKRGHP 59
>09_04_0721 +
19725695-19725697,19725793-19725859,19725944-19726044,
19726780-19726824,19727052-19727522,19727972-19728142
Length = 285
Score = 26.2 bits (55), Expect = 8.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 224 GPLTFQIRQQV*LACTXGLPGTVSHMGVYQTTPGCSTCH 108
G LTF+ +Q + L C GLP G++ G ST H
Sbjct: 46 GLLTFRSKQVLELGCGYGLP------GIFACLKGASTVH 78
>01_06_0968 +
33466574-33466607,33467087-33467115,33467438-33467595,
33468319-33468436,33468520-33468708,33469008-33469343,
33469468-33469569,33469696-33469890,33469993-33470155,
33470314-33470579,33470670-33470765,33470860-33471255,
33471403-33471501
Length = 726
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -1
Query: 294 VLDYLFD----ETFFPKSMSALLAREPRTFNLSDTTAGVISL 181
V+D+L D TFFP+ +S + T+ SD GVI L
Sbjct: 281 VVDFLMDPYNYRTFFPEVISGAVTNRIYTWPTSDGYNGVIQL 322
>01_01_0014 +
84379-84600,84737-84830,84935-85086,85212-85299,
85348-86681,87291-87398,87500-87583
Length = 693
Score = 26.2 bits (55), Expect = 8.1
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 182 CTXGLPGTVSHM--GVYQTTPGCSTCHELXLXTTSSSXLCRHRILPSSS 42
C G+P +V GV T+ CST L + TSSS H I P SS
Sbjct: 492 CATGVPYSVKETPAGVLCTSDHCSTGTPLTVEETSSSVSVVH-IEPMSS 539
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,754,896
Number of Sequences: 37544
Number of extensions: 184737
Number of successful extensions: 521
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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