Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0802
(369 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0) 97 4e-21
SB_30429| Best HMM Match : DUF286 (HMM E-Value=9.8) 29 1.2
SB_14029| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 28 2.7
SB_6399| Best HMM Match : zf-MYND (HMM E-Value=2.6) 28 2.7
SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19) 27 3.6
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_33723| Best HMM Match : Borrelia_orfD (HMM E-Value=1.8) 27 6.3
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2) 26 8.3
SB_5391| Best HMM Match : BTB (HMM E-Value=1.1e-09) 26 8.3
>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
Length = 115
Score = 97.1 bits (231), Expect = 4e-21
Identities = 51/89 (57%), Positives = 59/89 (66%)
Frame = +2
Query: 2 KDAKASAKQPQKTQXXXXXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPPYEKLYQEVPQY 181
KD K AK+PQK Q VRDKLNN VLFDK Y+KLY+EVP Y
Sbjct: 4 KDPKKDAKKPQKAQKPAGSGGGKAKKKKWSKGK-VRDKLNNLVLFDKATYDKLYKEVPSY 62
Query: 182 KLITPAVVSERLKVRGSLARRALIDLGKK 268
+LITP+VVSERLK+RGSLARRAL++L K
Sbjct: 63 RLITPSVVSERLKIRGSLARRALLELQSK 91
Score = 40.7 bits (91), Expect = 4e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYXRATKG 330
L+ KGLIK+V +HH Q+IY RATKG
Sbjct: 88 LQSKGLIKEVSKHHSQLIYTRATKG 112
>SB_30429| Best HMM Match : DUF286 (HMM E-Value=9.8)
Length = 283
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 261 PKSMSALLAREPRTFNLSDTTAGVISLYXGTSW 163
P S+ + + + RTFNL + + ++ LY T W
Sbjct: 22 PSSLGLITSPDRRTFNLRNGSGPIVHLYLRTLW 54
>SB_14029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 306 HLPMVLDYLFDETFFPKSMSALLAREPRTFNLSDTTAGVI 187
H + DY F ET+ P+S+ L N+SDT+ GV+
Sbjct: 165 HDQLYPDYAFAETWMPESIVNGLRALGHKVNVSDTSHGVV 204
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 3 RTRRLRPNSLKKHRRRRKDPVAAKPRRR 86
R RR P RRRRK P + PRRR
Sbjct: 907 RRRRDSPTPSPPPRRRRKSPSPSPPRRR 934
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 3 RTRRLRPNSLKKHRRRRKDPVAAKPRRRSG 92
R R+ RP +++RR RK P+ R +SG
Sbjct: 554 RGRKRRPRLGRRNRRLRKTPIVCTKRGKSG 583
>SB_6399| Best HMM Match : zf-MYND (HMM E-Value=2.6)
Length = 149
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 201 TAGVISLYXGTSWYSFSYGGLSNNTW 124
TA ISLY GT+W + GG+ + W
Sbjct: 49 TAWTISLY-GTAWTVYQEGGVDKSIW 73
>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
Length = 111
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 214 VKGPRFPGXKSTHRLREKGLIKQVVQHHG 300
VKG G T L + G +KQ++Q HG
Sbjct: 77 VKGQSIGGGMETAELYQSGKLKQLLQDHG 105
>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 24 NSLKKHRRRRKDPVAAKPRRRSGPK 98
N KH ++K PV P+R GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328
>SB_33723| Best HMM Match : Borrelia_orfD (HMM E-Value=1.8)
Length = 140
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 92 TTSSSXLCRHRILPSSSVFFEA-VWPKPSR 6
TT+ + L I S ++ F +WPKPSR
Sbjct: 3 TTTQTPLSGQNIFESFTILFTIPIWPKPSR 32
>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
Length = 1244
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 144 GLSNNTWLFNLSRTXPXDH 88
G+SN+ WL N S T P +H
Sbjct: 259 GISNDDWLSNPSFTSPIEH 277
>SB_5391| Best HMM Match : BTB (HMM E-Value=1.1e-09)
Length = 367
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Frame = -2
Query: 161 TVSHMGVYQTTPGCSTCHELXLXTTSSSXLC--RHRI 57
T H G Y G S C EL + +C RHRI
Sbjct: 328 TTQHTGSYAQNRGWSCCGELQKRSKGCKPVCLSRHRI 364
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,016,685
Number of Sequences: 59808
Number of extensions: 216713
Number of successful extensions: 647
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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