Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0802
(369 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M64716-1|AAA16105.1| 125|Homo sapiens ribosomal protein protein. 84 1e-16
BC004986-1|AAH04986.1| 125|Homo sapiens ribosomal protein S25 p... 84 1e-16
BC004294-1|AAH04294.1| 125|Homo sapiens ribosomal protein S25 p... 84 1e-16
BC003537-1|AAH03537.1| 125|Homo sapiens ribosomal protein S25 p... 84 1e-16
AB061844-1|BAB79482.1| 125|Homo sapiens ribosomal protein S25 p... 84 1e-16
BC039669-1|AAH39669.1| 236|Homo sapiens chromosome 11 open read... 31 1.5
AL034424-5|CAI42506.1| 301|Homo sapiens solute carrier family 1... 29 3.5
>M64716-1|AAA16105.1| 125|Homo sapiens ribosomal protein protein.
Length = 125
Score = 84.2 bits (199), Expect = 1e-16
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +2
Query: 104 VRDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
VRDKLNN VLFDK Y+KL +EVP YKLITPAVVSERLK+RGSLAR AL +L K
Sbjct: 40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYXRATKG 330
L KGLIK V +H QVIY R TKG
Sbjct: 91 LLSKGLIKLVSKHRAQVIYTRNTKG 115
>BC004986-1|AAH04986.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 84.2 bits (199), Expect = 1e-16
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +2
Query: 104 VRDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
VRDKLNN VLFDK Y+KL +EVP YKLITPAVVSERLK+RGSLAR AL +L K
Sbjct: 40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYXRATKG 330
L KGLIK V +H QVIY R TKG
Sbjct: 91 LLSKGLIKLVSKHRAQVIYTRNTKG 115
>BC004294-1|AAH04294.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 84.2 bits (199), Expect = 1e-16
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +2
Query: 104 VRDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
VRDKLNN VLFDK Y+KL +EVP YKLITPAVVSERLK+RGSLAR AL +L K
Sbjct: 40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYXRATKG 330
L KGLIK V +H QVIY R TKG
Sbjct: 91 LLSKGLIKLVSKHRAQVIYTRNTKG 115
>BC003537-1|AAH03537.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 84.2 bits (199), Expect = 1e-16
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +2
Query: 104 VRDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
VRDKLNN VLFDK Y+KL +EVP YKLITPAVVSERLK+RGSLAR AL +L K
Sbjct: 40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYXRATKG 330
L KGLIK V +H QVIY R TKG
Sbjct: 91 LLSKGLIKLVSKHRAQVIYTRNTKG 115
>AB061844-1|BAB79482.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 84.2 bits (199), Expect = 1e-16
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +2
Query: 104 VRDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
VRDKLNN VLFDK Y+KL +EVP YKLITPAVVSERLK+RGSLAR AL +L K
Sbjct: 40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYXRATKG 330
L KGLIK V +H QVIY R TKG
Sbjct: 91 LLSKGLIKLVSKHRAQVIYTRNTKG 115
>BC039669-1|AAH39669.1| 236|Homo sapiens chromosome 11 open reading
frame 53 protein.
Length = 236
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/69 (33%), Positives = 29/69 (42%)
Frame = -1
Query: 261 PKSMSALLAREPRTFNLSDTTAGVISLYXGTSWYSFSYGGLSNNTWLFNLSRTXPXDHFF 82
P S ALL P T LS +G I+ + G+SW S G S ++L H
Sbjct: 120 PVSADALLTLPPSTSCLSQLESGSIAQHRGSSWGSSLAGAQS-----YSLHALEDLHHTP 174
Query: 81 FXALPPPDP 55
PPP P
Sbjct: 175 GYPTPPPYP 183
>AL034424-5|CAI42506.1| 301|Homo sapiens solute carrier family 13
(sodium-dependent dicarboxylate transporter), member 3
protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -1
Query: 261 PKSMSALLAREPRTFNLSDTTAGVISLYXGTSWYSFSYGGLSNNTWLFNLS 109
P +L +P + T+ ++ G W SF YGGLS W N S
Sbjct: 178 PSPTQPVLGAQPHS-RAQPLTSSCLASSRGWLWISFLYGGLSFRGWRKNKS 227
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,955,984
Number of Sequences: 237096
Number of extensions: 1074642
Number of successful extensions: 2214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2207
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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