Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0802
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    77   4e-15
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z81509-4|CAB04152.2|  236|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   1.4  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    28   2.4  
Z66516-9|CAN99713.1|  455|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z66516-8|CAB60308.2|  459|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z50015-2|CAN99700.1|  455|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z50015-1|CAB60292.2|  459|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   5.5  
L39212-1|AAC37255.1|  459|Caenorhabditis elegans transcription f...    27   5.5  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   5.5  
AL021172-3|CAN99704.1|  455|Caenorhabditis elegans Hypothetical ...    27   5.5  
AL021172-2|CAB60307.2|  459|Caenorhabditis elegans Hypothetical ...    27   5.5  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   7.3  
Z19555-3|CAA79616.1|  182|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    26   9.7  
AC024214-9|AAF36079.1|  790|Caenorhabditis elegans Calpain famil...    26   9.7  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 77.0 bits (181), Expect = 4e-15
 Identities = 38/55 (69%), Positives = 44/55 (80%)
 Frame = +2

Query: 104 VRDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
           VRDKLNN VLFD+  Y+KLY+EV  YKLITP+VVSERLKVR SLA+  L +L  K
Sbjct: 36  VRDKLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAK 90



 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +1

Query: 256 LREKGLIKQVVQHHGQVIYXRATK 327
           L+ KGL+K VV HHGQV+Y RATK
Sbjct: 87  LQAKGLVKCVVHHHGQVVYTRATK 110


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 3   RTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKXK 104
           R RR    S  +  RRR+ P AA PRRR  P+ +
Sbjct: 465 RRRRSPSGSKSRSPRRRRSPAAA-PRRRQSPQRR 497


>Z81509-4|CAB04152.2|  236|Caenorhabditis elegans Hypothetical
           protein F21A3.6 protein.
          Length = 236

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
 Frame = +2

Query: 149 YEKLYQEVPQYKLITP---AVVSERLKVRGSLARRA---LIDLGKKVSSNR*SNTMGR*S 310
           + +L+ E P+YKLI P   A+    L     L R A   L  LGK + S R    +G+  
Sbjct: 112 FVRLFSEYPRYKLIWPQFRAIPDSSLMNAVELRRHASVYLNGLGKIIDSMRDEEALGKSM 171

Query: 311 TRV 319
           +R+
Sbjct: 172 SRI 174


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 1   EGREGFGQTASKNTEEEGRIRWRQSXEEEVVXR 99
           E REG G    +   +  RIRW+   +EE+V R
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTR 57


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 104 VRDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERL-KVRGSL 235
           V  K  N +LFD+   EKL++++ +  +  P  V E+L +VR +L
Sbjct: 688 VYGKNTNCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732


>Z66516-9|CAN99713.1|  455|Caenorhabditis elegans Hypothetical
           protein W03C9.4b protein.
          Length = 455

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 119 NNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
           NN+ L + P   K  +  P + +ITP    +R     S A   +   G  V S+  S+T
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 426


>Z66516-8|CAB60308.2|  459|Caenorhabditis elegans Hypothetical
           protein W03C9.4a protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 119 NNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
           NN+ L + P   K  +  P + +ITP    +R     S A   +   G  V S+  S+T
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 430


>Z50015-2|CAN99700.1|  455|Caenorhabditis elegans Hypothetical
           protein W03C9.4b protein.
          Length = 455

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 119 NNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
           NN+ L + P   K  +  P + +ITP    +R     S A   +   G  V S+  S+T
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 426


>Z50015-1|CAB60292.2|  459|Caenorhabditis elegans Hypothetical
           protein W03C9.4a protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 119 NNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
           NN+ L + P   K  +  P + +ITP    +R     S A   +   G  V S+  S+T
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 430


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 42  RRRRKDPVAAKPRRRSGP 95
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>L39212-1|AAC37255.1|  459|Caenorhabditis elegans transcription
           factor protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 119 NNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
           NN+ L + P   K  +  P + +ITP    +R     S A   +   G  V S+  S+T
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 430


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 42  RRRRKDPVAAKPRRRSGP 95
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>AL021172-3|CAN99704.1|  455|Caenorhabditis elegans Hypothetical
           protein W03C9.4b protein.
          Length = 455

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 119 NNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
           NN+ L + P   K  +  P + +ITP    +R     S A   +   G  V S+  S+T
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 426


>AL021172-2|CAB60307.2|  459|Caenorhabditis elegans Hypothetical
           protein W03C9.4a protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 119 NNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
           NN+ L + P   K  +  P + +ITP    +R     S A   +   G  V S+  S+T
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 430


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 44  SVFFEAVWPKPSR 6
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>Z19555-3|CAA79616.1|  182|Caenorhabditis elegans Hypothetical
           protein F02A9.2 protein.
          Length = 182

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 143 PPYEKLYQEVP-QYKLITPAVVSERLK 220
           P   + Y ++P +YK + PA VSE LK
Sbjct: 21  PEVPENYDDIPAEYKSLIPAEVSEHLK 47


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 110 DKLNNQVLFDKPPYEKLYQEVPQYK 184
           ++L NQVLFDKP  EK +    ++K
Sbjct: 32  EELANQVLFDKPRGEKRWLGKERHK 56


>AC024214-9|AAF36079.1|  790|Caenorhabditis elegans Calpain family
           protein 6 protein.
          Length = 790

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
 Frame = -1

Query: 282 LFDETFFPKSMSALLAREPRTFNL-----SDTTAGVISLYXGTSWYSFSYGGLSNNTWLF 118
           LF++  FP + S++  ++P   ++     +   A    +  G S +    G L N  +L 
Sbjct: 157 LFEDPQFPANNSSIYYKKPPKSHIVWLRPAKIFANPRLIVNGKSRFDVRQGSLGNCWFLA 216

Query: 117 NLSRTXPXDHFFFXALPPPDPSF 49
             +     D  F+  +P PD SF
Sbjct: 217 AAATLAQRDELFYRVVP-PDQSF 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,951,663
Number of Sequences: 27780
Number of extensions: 150669
Number of successful extensions: 429
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)