Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0802
(369 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34555.1 68417.m04910 40S ribosomal protein S25, putative 69 7e-13
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 69 7e-13
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo... 68 2e-12
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) 68 2e-12
At1g24706.1 68414.m03104 expressed protein 28 1.7
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 28 2.2
At1g60380.1 68414.m06798 apical meristem formation protein-relat... 27 3.9
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 27 5.2
At3g26660.1 68416.m03331 LOB domain protein, putative / lateral ... 26 9.0
At3g26620.1 68416.m03327 LOB domain protein, putative / lateral ... 26 9.0
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin... 26 9.0
At1g16500.1 68414.m01973 expressed protein 26 9.0
>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
Length = 108
Score = 69.3 bits (162), Expect = 7e-13
Identities = 29/54 (53%), Positives = 44/54 (81%)
Frame = +2
Query: 107 RDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
++K+NN VLFD+ Y+KL E P++KLITP+++S+RL++ GSLARRA+ +L K
Sbjct: 34 KEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAK 87
>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)
Length = 125
Score = 69.3 bits (162), Expect = 7e-13
Identities = 28/51 (54%), Positives = 43/51 (84%)
Frame = +2
Query: 107 RDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDL 259
++K+NN VLFD+ Y+KL E P++KLITP+++S+RL++ GSLAR+A+ DL
Sbjct: 50 KEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDL 100
>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
ribosomal protein S25, Lycopersicon esculentum,
PIR2:S40089
Length = 108
Score = 68.1 bits (159), Expect = 2e-12
Identities = 28/54 (51%), Positives = 44/54 (81%)
Frame = +2
Query: 107 RDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
++K+NN VLFD+ Y+KL E P++KLITP+++S+R+++ GSLARRA+ +L K
Sbjct: 34 KEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYXRAT 324
++ L KG+I+ V H Q IY RAT
Sbjct: 79 RAIRELMAKGVIRMVAAHSSQQIYTRAT 106
>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
Length = 108
Score = 67.7 bits (158), Expect = 2e-12
Identities = 28/54 (51%), Positives = 44/54 (81%)
Frame = +2
Query: 107 RDKLNNQVLFDKPPYEKLYQEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
++K+NN VLFD+ Y+KL E P++KLITP+++S+R+++ GSLARRA+ +L K
Sbjct: 34 KEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYXRAT 324
++ L KGLI+ V H Q IY RAT
Sbjct: 79 RAIRELMAKGLIRMVSAHSSQQIYTRAT 106
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 117 NLSRTXPXDHFFFXALPPPDP 55
+L ++ P DHF LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 276 DETFFPKSMSALLAREPRTFNLSDTTAGVISLYXGTSWYSFSYGGLSNNTWLFNL 112
+E F P+ M+ + A T L +Y +WY S G L T LFN+
Sbjct: 733 NEMFAPRWMNKM-ASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNI 786
>At1g60380.1 68414.m06798 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 318
Score = 27.1 bits (57), Expect = 3.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 131 LFDKPPYEKLYQEVPQYKLITP 196
+F+K PY K + E+P + ++ P
Sbjct: 38 VFNKDPYVKFHAEIPSFVIVKP 59
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -1
Query: 276 DETFFPKSMSALLAREPRTFNLSDTTAGVISLYXGTSWYSFSYGGLSNNTWLFN 115
+E F P+ M+ + T L + + ++ +WY GGL T +FN
Sbjct: 731 NELFAPRWMNKMSGNS--TTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFN 782
>At3g26660.1 68416.m03331 LOB domain protein, putative / lateral
organ boundaries domain protein, putative (LBD24)
identical to SP|P59468 Putative LOB domain protein 24
{Arabidopsis thaliana}
Length = 121
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 114 LSRTXPXDHFFFXALPPPDPSFFFCV 37
L R P D F PP DP F CV
Sbjct: 12 LRRRCPKDCVFSPYFPPNDPQKFACV 37
>At3g26620.1 68416.m03327 LOB domain protein, putative / lateral
organ boundaries domain protein, putative (LBD23)
identical to SP|P59467 Putative LOB domain protein 23
{Arabidopsis thaliana}
Length = 121
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 114 LSRTXPXDHFFFXALPPPDPSFFFCV 37
L R P D F PP DP F CV
Sbjct: 12 LRRRCPKDCVFSPYFPPNDPQKFACV 37
>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
[Arabidopsis thaliana] GI:6491702; similar to myosin
GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
profiles: PF00063: myosin head (motor domain), PF00612:
IQ calmodulin-binding motif; identical to cDNA myosin
(ATM) GI:297068
Length = 1166
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 176 QYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNTMG 301
QYK I A V + +RG L RR D+G S +N +G
Sbjct: 907 QYKGIADASVVIQSAIRGWLVRRCSGDIGWLKSGGAKTNELG 948
>At1g16500.1 68414.m01973 expressed protein
Length = 259
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 173 GLPGTVSHMGVYQTTPGCSTCH 108
G PG +S++ V + P C CH
Sbjct: 219 GCPGCLSYVFVAKNNPKCPRCH 240
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,577,312
Number of Sequences: 28952
Number of extensions: 139486
Number of successful extensions: 380
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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