Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0801
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   0.83 
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   1.5  
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    25   5.9  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   5.9  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 287  PLQPREQLAVHDAMAXARQQLQATELSXAALARCIES 397
            P+   EQL VHD +      L+++E   A   RC+ S
Sbjct: 1760 PILDSEQLVVHDFLEELFSSLKSSEEDFALRTRCVTS 1796


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 113  LAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEW 229
            L  + I  S ED+    ++C S  M KLR+T     + W
Sbjct: 1489 LVQSAIRESSEDAIALAVDCDSEAMEKLRSTTTLDEESW 1527


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 163 GEGLGVFVAWAYHCCS 116
           G  + VF AWA +CCS
Sbjct: 138 GAAVRVFPAWAAYCCS 153


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 128 ICPSDEDSKTFTINCASGDML 190
           +CPS   S  F++NC +G M+
Sbjct: 62  LCPSLVGSMAFSMNCGAGGMV 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,607
Number of Sequences: 5004
Number of extensions: 29371
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)