Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0801
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0226 - 18420293-18420697 32 0.28
12_02_0230 + 15973390-15974645,16002878-16003097 31 0.85
05_05_0060 - 22015440-22015481,22015572-22015709,22016704-220167... 30 1.1
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 28 4.5
04_04_0825 + 28443961-28444099,28444527-28444603,28444710-284447... 28 6.0
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 28 6.0
08_02_0699 + 20155509-20156189 27 7.9
04_04_0999 - 30002433-30003279,30003384-30003513,30003620-30003758 27 7.9
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 27 7.9
03_02_0915 + 12360079-12360095,12360225-12361353 27 7.9
>06_03_0226 - 18420293-18420697
Length = 134
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Frame = -3
Query: 359 RSLVAAAWPTP----WRRGPRAALSAAGAG 282
R + AAA PT WRRGPR A SAAG G
Sbjct: 36 RVVAAAATPTTSTCGWRRGPRPAQSAAGDG 65
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 30.7 bits (66), Expect = 0.85
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 79 TAWTAGQGGGSFSCSSDMPKRRRLQDLHHKLRVRRHVEA 195
TA+T G G SC S+ P++ L L H R RR EA
Sbjct: 414 TAFTTS-GNGDLSCPSNFPRKEAL--LRHAFRARRFPEA 449
>05_05_0060 -
22015440-22015481,22015572-22015709,22016704-22016799,
22016911-22017135
Length = 166
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 91 AGQGGGSFSCSSDMPKRRRLQDLHHK 168
AG+GG +D+P+ RRL+DL K
Sbjct: 48 AGEGGAEADADADLPELRRLRDLEAK 73
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 516 GVLCWRCSTPRHCSRHCMLXADVAF 442
G +C+RC P H HC D F
Sbjct: 200 GYVCYRCRIPGHFIHHCPTIGDPKF 224
>04_04_0825 +
28443961-28444099,28444527-28444603,28444710-28444758,
28445283-28445367,28445506-28445755,28447053-28447373
Length = 306
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -2
Query: 201 ALSFNMSPDAQFMVKVLESSSLGH--ITAAAK*ASPLAGCPGCIVSPG 64
+LS ++ PD + M + S S ++++++ S +G GC+V+PG
Sbjct: 247 SLSLSLGPDPKCMPAIASSPSESSCILSSSSRSFSDCSGNSGCLVAPG 294
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 8 RWFAVDPETGVLSYYLYDGPGDTIQPGQPARG 103
RWFA+ GVLSYY GP + + RG
Sbjct: 106 RWFAL--HDGVLSYYKIHGPDRIVLSRETERG 135
>08_02_0699 + 20155509-20156189
Length = 226
Score = 27.5 bits (58), Expect = 7.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 507 CWRCSTPRHCSRHCM 463
CWRC P H + +CM
Sbjct: 211 CWRCGKPGHHTSNCM 225
>04_04_0999 - 30002433-30003279,30003384-30003513,30003620-30003758
Length = 371
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 134 PSDEDSKTFTINCASGDMLKLRATDARARQEWVD 235
PS S T T NC+SGD ++ ++ +E D
Sbjct: 143 PSPSSSTTTTTNCSSGDSAGEQSNTSKEEEEETD 176
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 313 RELLSRLQGRVGPHHXGVYLAMALSPVDPLLARAG 209
+EL + QG+V H G L M SP LLA G
Sbjct: 198 KELSAVYQGQVIKAHDGAILTMKFSPDGQLLATGG 232
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 516 GVLCWRCSTPRHCSRHCMLXADVAF 442
G +C RC P H +HC D F
Sbjct: 119 GYVCHRCRVPGHFIQHCPTNGDPRF 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,942,675
Number of Sequences: 37544
Number of extensions: 283739
Number of successful extensions: 1095
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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