Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0796
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0034 + 18507023-18507243,18507347-18507473,18508463-185085... 31 0.80
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410... 31 0.80
11_06_0003 - 19155407-19155953,19156114-19156148 30 1.4
07_01_0779 + 6020009-6020174,6022307-6022428,6022853-6022962,602... 29 3.2
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446... 28 4.3
10_01_0129 + 1535823-1537196 27 7.5
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 27 7.5
11_06_0409 - 23217558-23218355,23218808-23219297,23219515-232195... 27 9.9
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 27 9.9
04_04_1588 - 34633057-34633824 27 9.9
01_05_0490 + 22672241-22674679 27 9.9
>11_05_0034 +
18507023-18507243,18507347-18507473,18508463-18508531,
18508620-18508763
Length = 186
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/33 (54%), Positives = 18/33 (54%)
Frame = -2
Query: 256 HLRDALPPPPQTRRRGE*CCPRARSSPVHSPLS 158
HLR ALP PP R G P A SSP H LS
Sbjct: 15 HLRRALPSPP---RAGALLLPAAASSPAHRFLS 44
>09_04_0075 -
14340458-14340551,14340643-14340814,14340895-14341066,
14341617-14341811,14341886-14342053,14342150-14342335,
14342797-14342881,14342896-14343206,14344222-14344569
Length = 576
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +1
Query: 28 EFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGELY-RNVAEREE--NEQGRNEPED 198
EFM WL+ + +++S +R +I + + +E E + +++ E++E +EQ + D
Sbjct: 338 EFMSWLLNTMHSKLKSRKRNRSIIHDCFQGELEVVKEFHKKHIVEKKEDGDEQNGDAGSD 397
Query: 199 SITHPSAV 222
+T S V
Sbjct: 398 IVTETSRV 405
>11_06_0003 - 19155407-19155953,19156114-19156148
Length = 193
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Frame = +1
Query: 40 WLVKEVSLEIESI--------ITSRDVITEI-VRDVVEARGELYRNVAEREENEQGRNEP 192
W+ +E+S IES I S+ V ++ VRD V +R E + VAE EE E+ E
Sbjct: 6 WIYREISY-IESYTNWSHHGEIPSKQVPNQVTVRDEVVSRDEDFMVVAEEEEEEEEEEEE 64
Query: 193 ED 198
E+
Sbjct: 65 EE 66
>07_01_0779 +
6020009-6020174,6022307-6022428,6022853-6022962,
6024342-6024395,6026977-6027096,6027790-6029347
Length = 709
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 268 ATSCHLRDALPPPPQTRRRGE*CCPRARSSPV 173
ATSC RD PPPP + ++ R RS P+
Sbjct: 604 ATSCLPRDDPPPPPTSAKKAGFLRRRRRSPPL 635
>02_04_0090 -
19643182-19643322,19644192-19644335,19644563-19644626,
19644710-19644796,19645371-19645513,19645706-19645771,
19645954-19646046,19646165-19646230,19646363-19646433,
19646882-19646982,19647217-19647317,19647421-19647528,
19647639-19648064
Length = 536
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = -2
Query: 262 SCHLRDALPPPPQTRRRGE*CCPRARSSPVHSPL 161
S HLR A PPPP R R P SP H L
Sbjct: 8 SLHLRLAPPPPPHRRGRPPRHAPFLPLSPYHHHL 41
>10_01_0129 + 1535823-1537196
Length = 457
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 247 DALPPPPQTRRRGE 206
D PPPP+ RRRGE
Sbjct: 64 DGQPPPPRRRRRGE 77
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 152 LLRERRMNRGGTSPRTASLTPPPCLRRGRKSISKMTRR 265
LL ER+ G P AS P CLRR R+S + RR
Sbjct: 43 LLPERQAPEG-RRPLAASRCLPTCLRRHRRSSRRSHRR 79
>11_06_0409 -
23217558-23218355,23218808-23219297,23219515-23219591,
23219624-23219863,23220338-23220481,23220522-23220582,
23220875-23220934,23221097-23221192,23221306-23221398,
23221494-23221585
Length = 716
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 122 WKPEENCTETL--LRERRMNRGGTSPRTASLTPPPCL 226
WK NC T+ R+R++ G R+ ++P CL
Sbjct: 244 WKVASNCLATMDNKRKRKLRGGEFCTRSLQMSPSQCL 280
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 146 ETLLRERRMNRGGTSPRTASLTP-PPCLRRGRKSISKMTRRRETN 277
ETL+ +R + GG+S TA T P + ++K RR N
Sbjct: 175 ETLVNDRLLQDGGSSASTAECTSLAPSTSSASRVVNKKPPRRSLN 219
>04_04_1588 - 34633057-34633824
Length = 255
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 238 PPPPQTRRRGE*CC 197
PPPP+ R RG CC
Sbjct: 54 PPPPRRRSRGRRCC 67
>01_05_0490 + 22672241-22674679
Length = 812
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 238 PPPPQTRRRGE*CCPRARSSPVHSPLSQQR 149
PPPP TRR + P +R +P P QQ+
Sbjct: 644 PPPPTTRRSRKPPQPPSRPAPPPPPPPQQQ 673
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,312
Number of Sequences: 37544
Number of extensions: 217687
Number of successful extensions: 904
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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