Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0796
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.2  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 379 IFYSSYKKIDNLF 341
           +FY  YKK+ NL+
Sbjct: 433 VFYQLYKKVMNLY 445


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 159 LSNVSVQFSSGFHHV 115
           LS  +V ++SGF+H+
Sbjct: 109 LSPAAVSYTSGFYHI 123


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 166 ENEQGRNEPEDSIT 207
           ENE G ++P D++T
Sbjct: 955 ENEIGASDPSDTVT 968


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 222 HGGGVSDAVLGLVPPLFIL 166
           HGGG+  A+L  +  L +L
Sbjct: 7   HGGGMVSAILSSIVLLLLL 25


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 128 PEENCTETLLRERRMNR 178
           PEEN  E LL    +NR
Sbjct: 40  PEENVVEELLSPLTLNR 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,580
Number of Sequences: 438
Number of extensions: 2451
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)