Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0795
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 44 2e-05
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 41 1e-04
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 29 0.52
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 28 0.90
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 27 1.6
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.8
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 4.8
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 6.3
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 8.4
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 43.6 bits (98), Expect = 2e-05
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +2
Query: 239 LENSSEEFVDIEAKFYSEVHALECKYGKLYKPLYEKRALIVNGTYEPNDDE 391
L + + D+E++F E+ LE Y K Y P++++R+ +V G EP ++E
Sbjct: 82 LRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADEPTEEE 132
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 514 NVKGXPDFWYNIFRDVSMLSEMMQEXD 594
+ KG P+FW ++V LSEM+ D
Sbjct: 160 DTKGIPEFWLTAMKNVLSLSEMITPED 186
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +2
Query: 269 IEAKFYSEVHALECKYGKLYKPLYEKRALIVNGTYEPNDDE 391
I+ +F ++ LE KY K Y+P++ +RA I+ G EP DDE
Sbjct: 108 IQYEFRQKMLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDE 148
Score = 29.5 bits (63), Expect = 0.39
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 502 SNDPNVKGXPDFWYNIFRDVSMLSEMMQEXD 594
+N P+ KG P+FW +V ++ EM+ D
Sbjct: 158 NNLPDPKGIPEFWLTCLHNVFLVGEMITPED 188
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 29.1 bits (62), Expect = 0.52
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Frame = +2
Query: 197 DGIPTPE--CSSANPRLENSSEEFVDIEAKFYSEVHALECKYGKLYKPLYEKRALIVNGT 370
DG+ PE + +P + E D A S V L K GKL++ K + + +
Sbjct: 411 DGLKDPEKWLQNTDPSTVSRVEVSTDEVASAISLVGRLRRKLGKLFRFRRPKARVFDSSS 470
Query: 371 YEPNDDECLNPWRDDTXE-----EELARAVQNAAITEGEXKKDDKAIEP 502
P+D P EL+ + A+ E + ++ K + P
Sbjct: 471 SVPSDSSICRPESSGNSSIGLSASELSDSFNRLAVNESQKDRERKQVHP 519
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 28.3 bits (60), Expect = 0.90
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -3
Query: 578 ISLSIETSLNMLYQKSGIPFTLGSLE 501
IS ++ LN+L +KSG+PF+LG ++
Sbjct: 292 ISTALVGYLNILVKKSGMPFSLGVVQ 317
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 27.5 bits (58), Expect = 1.6
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Frame = +2
Query: 158 NDSGHHKSPSCRSDGIPTPECSSAN--PRLENSSEEFVDI--EAKFYSEVHALECKY-GK 322
N + KS ++ T +S N P+ + + + D + F S A+ K +
Sbjct: 206 NQNSPKKSELGETESSNTTPANSRNDVPQTDGAIHDLDDAGSPSNFESNRFAIAQKADAE 265
Query: 323 LYKPLYEKRALIVNGTYEPNDDECLNPWRDDTXEEE 430
+Y+ L + R L ++GT E N+DE P DT +E
Sbjct: 266 IYEVLKKNRILQIDGTIEDNEDEKKPP--VDTPSDE 299
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 126 HLLKSGVTRNEMIAAITNRLHAEAMASLP 212
HLL++ T +E AA +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +2
Query: 323 LYKPLYEKRALIVNGTYEPNDDECLNPW 406
+Y+ Y +R+ + + +P+ CL+PW
Sbjct: 142 MYRNGYGRRSFRIEESVQPDTMSCLSPW 169
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 6.3
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +2
Query: 161 DSGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVDIEAKFYSEVHALECKYGKLYKPLY 340
+ G + S S RS TPE S + + EEF +I+A + S+ + G LY+ Y
Sbjct: 66 EEGEYSSESGRS----TPELSPDDFEDADDEEEFEEIDAGYSSDSSTEDVAPG-LYESPY 120
Query: 341 EKRALI 358
++ I
Sbjct: 121 DENLYI 126
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 1 IXTAVRVKY*IWVPSNVLV--TTTHPKWSL 84
I +R+K +WV +NVL+ T H K++L
Sbjct: 531 IHETIRIKSAVWVENNVLLYATLDHLKYAL 560
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,153
Number of Sequences: 5004
Number of extensions: 39727
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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