Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0795
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 51 8e-07
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 48 4e-06
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 45 5e-05
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 38 0.006
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 31 0.70
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756... 29 2.8
05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948 29 3.7
12_01_0109 + 853043-853426,853653-853787,853866-854138 28 4.9
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 28 4.9
09_06_0262 - 21921647-21922796,21922897-21923423 27 8.6
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +2
Query: 266 DIEAKFYSEVHALECKYGKLYKPLYEKRALIVNGTYE 376
D+EAKF+ E ALE KY K+Y+PLY KR IVNG E
Sbjct: 73 DLEAKFFEERAALEAKYQKMYEPLYSKRYEIVNGVVE 109
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 520 KGXPDFWYNIFRDVSMLSEMMQEXD 594
KG P+FW N ++ +LSE +QE D
Sbjct: 129 KGVPEFWLNAMKNHEILSEEIQERD 153
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/37 (62%), Positives = 26/37 (70%)
Frame = +2
Query: 266 DIEAKFYSEVHALECKYGKLYKPLYEKRALIVNGTYE 376
+IE KF+ E ALE KY KLY+PLY KR IVNG E
Sbjct: 74 EIELKFFEERAALEAKYQKLYEPLYTKRYNIVNGVVE 110
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 508 DPNVKGXPDFWYNIFRDVSMLSEMMQEXD 594
D + KG PDFW + +LSE +QE D
Sbjct: 128 DADAKGVPDFWLTAMKTNEVLSEEIQERD 156
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 266 DIEAKFYSEVHALECKYGKLYKPLYEKRALIVNGTYE 376
++EAKF E ALE Y KLY PLY KR+ IV+G E
Sbjct: 56 ELEAKFLEEKAALEANYQKLYGPLYSKRSEIVSGVLE 92
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 520 KGXPDFWYNIFRDVSMLSEMMQEXD 594
KG PDFW ++ +L+E + E D
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESD 127
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 266 DIEAKFYSEVHALECKYGKLYKPLYEK 346
++E KF+ E ALE KY KLY PLY K
Sbjct: 180 ELEVKFFEEKAALEAKYQKLYGPLYSK 206
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 520 KGXPDFWYNIFRDVSMLSEMMQEXD 594
KG PDFW N ++ +L+E + E D
Sbjct: 208 KGVPDFWLNAMKNNEILAEEIHESD 232
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +2
Query: 278 KFYSEVHALECKYGKLYKPLYEKRALIVNGTYEPNDDECLNPWRDDTXEEELARAVQNAA 457
K Y ++ + G +P E A IV + EPN + N +D+T E+ A +NAA
Sbjct: 663 KIYRKIALQLVRQGVSNEPTQE--AAIVTASEEPNGGDSANKLKDETMEDP---ATENAA 717
Query: 458 ITEGE 472
+T +
Sbjct: 718 MTNAD 722
>04_04_1509 - 34074206-34074398,34074506-34074777,34075411-34075608,
34076092-34076187,34076318-34076500,34076597-34076799,
34076887-34077013,34077098-34077292,34077400-34077540,
34077669-34077812,34077876-34078040,34078776-34078976,
34079049-34079195,34079275-34079427,34079731-34079833,
34079954-34080069,34080168-34080349,34080442-34080541,
34081200-34081527,34081605-34081834,34081979-34082110,
34082787-34082859,34083274-34083338
Length = 1248
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +2
Query: 239 LENSSEEFVDIEAKFYSEVHALECKYGKL--YKPLYEKRALIV--NGTYEPNDDECLNPW 406
LEN ++ + ++Y+ + ++ K +PL +K + N P++ +PW
Sbjct: 848 LENLYKQEQVLRKRYYNTIEDMKGKIRVFCRLRPLNDKELIEKDKNIVCSPDEFTVAHPW 907
Query: 407 RDDTXEEELARAVQNAAITEGEXKKDDK 490
+DD ++ + V +A T+ E +D K
Sbjct: 908 KDDKSKQHIYDRVFDANTTQEEVFEDTK 935
>05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948
Length = 508
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -1
Query: 415 VITPWVETFIIIRFICAIHNKSSLFIKRLVKFPIFAFECMYFTVKLGLNVD 263
V+ PW+++F I + +H+K +L K +K A + + +K G+ +D
Sbjct: 459 VLPPWLDSFPIPNAVLCLHSKINLSGKNNMKNETLA-DILVINIKTGILMD 508
>12_01_0109 + 853043-853426,853653-853787,853866-854138
Length = 263
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 207 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 76
G+P L GD+ + L+F G+ H T VAL F Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 517 VKGXPDFWYNIFRDVSMLSEMMQEXD 594
+K PDFW F ML E++ E D
Sbjct: 72 IKQIPDFWLTAFLSHPMLGELLTEDD 97
>09_06_0262 - 21921647-21922796,21922897-21923423
Length = 558
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 392 CLNPWRDDTXEEELARAVQNAAITEGEXKKDDKAIEPPMIPM*R 523
CL+PW D E V +AA GE D + E M + R
Sbjct: 300 CLSPWSDHRSSEYYNCNVYDAAKANGEASDDKRRREQGMASLDR 343
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,552,824
Number of Sequences: 37544
Number of extensions: 269327
Number of successful extensions: 622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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