Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0790
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    25   5.1  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   6.8  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 38  VQTTVKKIHAYSXHLFALRTL 100
           ++  VKKIH ++  +F LRTL
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTL 83


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 214  RRGFRLVPSNKSCKLHLHQVKLHKRDNKHTFQRVWRD 104
            +R  +L   N   KLH  ++    R+ +HT Q+ + D
Sbjct: 915  KRVRKLEKVNSELKLHCFELSERLREREHTLQQTFGD 951


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,041
Number of Sequences: 5004
Number of extensions: 38954
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)