Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0788
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    27   0.93 
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   3.8  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    25   5.0  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   6.6  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    24   8.7  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    24   8.7  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   8.7  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 80  IFVFNIDIFLIISLKWKWFGGGTVLFWPCCFCCRC 184
           +F F+I +FL++ L   +    +V FW   F   C
Sbjct: 403 VFAFSISVFLVLHLTQAFHVCPSVTFWKTLFMSLC 437


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 197 LEPVRIGSRSNTARTKQYLHRTISTLGKLSRK 102
           L+P   GSRS+     ++ H + ++LG + RK
Sbjct: 469 LQPTATGSRSSRLSFSRHGHGSQTSLGSIKRK 500


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 136 EPF-PL*GNYQENINIKHKNPLHFSCYYRNTN 44
           +PF P    YQE +N   KNP+  S +  +T+
Sbjct: 63  QPFLPFANEYQELLNFTQKNPILASLFLFSTD 94


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 120 REIIKKISILNTKIHYIFHVITETLILFLSSKFSS 16
           R  + ++ +++  IH+I  V    L +F SSK++S
Sbjct: 182 RVSLLQLYLISWTIHFINFVFHSLLAVFFSSKYTS 216


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 189 SSHRQQKQHGQNKTVPPPNHFHFREIIKKISILNTKI 79
           S + Q+ +HG+N  +     F F   ++ +S+L T +
Sbjct: 218 SPYSQRGEHGENLWLAGSQQFQFGAEVQVVSLLYTAL 254


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -1

Query: 189 SSHRQQKQHGQNKTVPPPNHFHFREIIKKISILNTKIHYI 70
           ++H Q++QH +N+      + H++ + K +  L    H I
Sbjct: 72  TTHLQKRQHSENRFGVRVENLHYQVLEKDVLSLFENFHPI 111


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 214 HRLHPFWSQFASAAEATRPEQNSTSTEPFP 125
           H+   FW Q  S+  A  P+     TEP P
Sbjct: 18  HQYRSFWIQ--SSLRALPPDVKQNKTEPIP 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,504,043
Number of Sequences: 5004
Number of extensions: 23751
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)