Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0788
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54348| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_7507| Best HMM Match : LIM (HMM E-Value=1.9)                        28   2.9  
SB_26446| Best HMM Match : Ion_trans (HMM E-Value=0.25)                27   5.0  
SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       27   6.6  
SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)                       27   6.6  
SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)                        27   6.6  
SB_39231| Best HMM Match : zf-C2H2 (HMM E-Value=3.4e-31)               27   8.7  
SB_13357| Best HMM Match : 7tm_1 (HMM E-Value=0.0011)                  27   8.7  

>SB_54348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 189 SSHRQQKQHGQNKTVPPPNHFHFREIIKKISI-LNTKIHYIFH 64
           S+ R+Q Q  Q+ T   PN+  +RE + +I+  +NT +H I++
Sbjct: 13  STRRRQSQEQQDYTSGYPNNEEYREDLGQITHGINTLVHDIYN 55


>SB_7507| Best HMM Match : LIM (HMM E-Value=1.9)
          Length = 200

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +2

Query: 104 FLIISLKWKWFGGGTVLFWPCCFCCRC 184
           FL ISL W   G  T      CFCC C
Sbjct: 12  FLCISLGWISRGKDTSAMGRNCFCCAC 38


>SB_26446| Best HMM Match : Ion_trans (HMM E-Value=0.25)
          Length = 511

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 339 TIAPLTRTTSR-RLLECYVCAYKTDTPIRS 425
           +I PL R  S  RL   +VC  K D P+RS
Sbjct: 224 SICPLVRLPSLGRLARLFVCHLKVDMPLRS 253


>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
 Frame = +2

Query: 107  LIISLKWKWFGGGTV-----LFWPCCFCCRCELA 193
            L +S KW WFGG  +     +  P  FC   ++A
Sbjct: 1639 LFVSQKWSWFGGQRLKYTKQILLPSAFCVAGDIA 1672


>SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)
          Length = 175

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +2

Query: 149 VLFWPCC-FCCRCELAPKW 202
           +LF+ CC +CC C    KW
Sbjct: 100 LLFFGCCIYCCCCRRCSKW 118


>SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)
          Length = 175

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +2

Query: 149 VLFWPCC-FCCRCELAPKW 202
           +LF+ CC +CC C    KW
Sbjct: 100 LLFFGCCIYCCCCRRCSKW 118


>SB_39231| Best HMM Match : zf-C2H2 (HMM E-Value=3.4e-31)
          Length = 505

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 166 TRPEQNSTSTEPFPL*GNYQENINIKHKNP 77
           ++P++NST  + F +   YQ   N K+ NP
Sbjct: 25  SKPDENSTEADEFCIEITYQPMHNSKNNNP 54


>SB_13357| Best HMM Match : 7tm_1 (HMM E-Value=0.0011)
          Length = 358

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 101 IFLIISLKWKWFGGGTVLFWPC 166
           I+ IIS  +KW GG TV    C
Sbjct: 93  IYTIISRSYKWIGGDTVSIGLC 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,308,449
Number of Sequences: 59808
Number of extensions: 176670
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)