SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0788
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26890.2 68416.m03365 expressed protein                             35   0.020
At3g26890.1 68416.m03364 expressed protein                             35   0.020
At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR cla...    29   1.8  
At5g63730.1 68418.m07999 IBR domain-containing protein contains ...    28   3.1  
At3g63290.2 68416.m07114 expressed protein                             27   4.1  
At3g63290.1 68416.m07113 expressed protein                             27   4.1  
At1g14440.2 68414.m01713 zinc finger homeobox family protein / Z...    27   4.1  
At1g14440.1 68414.m01712 zinc finger homeobox family protein / Z...    27   4.1  
At1g63300.1 68414.m07156 expressed protein similar to Intracellu...    27   5.4  
At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family pr...    27   5.4  
At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA li...    27   7.1  
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein...    27   7.1  
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein...    27   7.1  
At5g59400.2 68418.m07444 expressed protein predicted protein, Ar...    26   9.4  
At5g59400.1 68418.m07443 expressed protein predicted protein, Ar...    26   9.4  
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     26   9.4  

>At3g26890.2 68416.m03365 expressed protein
          Length = 649

 Score = 35.1 bits (77), Expect = 0.020
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 211 RLHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLH-FSCYYRNTNFIS 35
           +L+ FW Q    ++     Q+S S    P+ G  Q  ++   K PLH F C Y  T+  +
Sbjct: 431 KLNKFWGQKVKTSQMNSDAQSSKSQLRIPMKGRIQLVLSNPEKTPLHTFLCNYDLTDMPA 490

Query: 34  IFKIFL 17
             K FL
Sbjct: 491 GTKTFL 496


>At3g26890.1 68416.m03364 expressed protein
          Length = 649

 Score = 35.1 bits (77), Expect = 0.020
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 211 RLHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLH-FSCYYRNTNFIS 35
           +L+ FW Q    ++     Q+S S    P+ G  Q  ++   K PLH F C Y  T+  +
Sbjct: 431 KLNKFWGQKVKTSQMNSDAQSSKSQLRIPMKGRIQLVLSNPEKTPLHTFLCNYDLTDMPA 490

Query: 34  IFKIFL 17
             K FL
Sbjct: 491 GTKTFL 496


>At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1054

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -1

Query: 171 KQHGQNKTVPPPNHFHFREIIKKISILNTKIHYIFHVITETLILFLSSKFSSR 13
           +Q   +K +    + +F E+  +  +  TK  YI H     L  F S +FSS+
Sbjct: 458 QQTRSSKNLEELGNEYFSELESRSLLQKTKTRYIMHDFINELAQFASGEFSSK 510


>At5g63730.1 68418.m07999 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
           domain
          Length = 506

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 110 IISLKWKWFGGGTVLFWPCCFCCRCELAPKW 202
           ++ +K K + GGT  FW   +C RC  A  W
Sbjct: 451 LVDVKVKSYNGGTGPFW---YCDRCTYANTW 478


>At3g63290.2 68416.m07114 expressed protein
          Length = 303

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 208 LHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLHFSCYYRNT 47
           LHP WSQ  S +E T     S    P P   N    ++ + ++ + F+ + R T
Sbjct: 236 LHPKWSQTFSVSEYTMEHLRSDEVVPRPDLQNIVPPLSSRLRDGMTFAEFSRET 289


>At3g63290.1 68416.m07113 expressed protein
          Length = 403

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 208 LHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLHFSCYYRNT 47
           LHP WSQ  S +E T     S    P P   N    ++ + ++ + F+ + R T
Sbjct: 336 LHPKWSQTFSVSEYTMEHLRSDEVVPRPDLQNIVPPLSSRLRDGMTFAEFSRET 389


>At1g14440.2 68414.m01713 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 312

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 214 HRLHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQEN--INIKHKNPLH 71
           H +H      A++A  T    N+T   P PL GN   N   +  H++P H
Sbjct: 27  HMIHHHDHHAANSAPPTHNNNNTTQPPPMPLHGNGHGNNYDHHHHQDPHH 76


>At1g14440.1 68414.m01712 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 312

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 214 HRLHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQEN--INIKHKNPLH 71
           H +H      A++A  T    N+T   P PL GN   N   +  H++P H
Sbjct: 27  HMIHHHDHHAANSAPPTHNNNNTTQPPPMPLHGNGHGNNYDHHHHQDPHH 76


>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]; similar to Myosin II heavy
           chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
           discoideum]
          Length = 1029

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 398 SADVAFQKPSAGSSREWSNSLRXGEDRRCSSTRSXN 291
           SA   F++PS  S  EWS S   G      ST S N
Sbjct: 238 SAKSLFEEPSRISESEWSGSSDHGISSTDDSTNSSN 273


>At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 771

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 270 EDEPPXKIXAPGRRAPPVLAAXKTIAPLTRTTSRR 374
           E+ P   + AP     PV A    + PLT++ SRR
Sbjct: 718 EEAPRKTVSAPMAIPAPVSAPESEVKPLTKSISRR 752


>At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA
           ligase identical to SP|Q39230 Seryl-tRNA synthetase (EC
           6.1.1.11) (Serine--tRNA ligase) (SerRS) {Arabidopsis
           thaliana}
          Length = 451

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 188 VRIGSRSNTARTKQYLHRTISTLGKLSR 105
           +R G + +  +TKQY+H   STL    R
Sbjct: 375 IRYGQKKSNEQTKQYVHMLNSTLTATER 402


>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
           similar to siah-1A protein [Mus musculus] GI:297035;
           contains Pfam profile PF03145: Seven in absentia protein
           family
          Length = 327

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 360 TTSRRLLECYVCAYKTDTPIRSC 428
           T+   LLEC VC Y    PI  C
Sbjct: 56  TSVYELLECPVCTYSMYPPIHQC 78


>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
           similar to siah-1A protein [Mus musculus] GI:297035;
           contains Pfam profile PF03145: Seven in absentia protein
           family
          Length = 326

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 321 VLAAXKTIAPLTRTTSRRLLECYVCAYKTDTPIRSC 428
           V AA   + P T T+   LLEC VC      PI  C
Sbjct: 43  VNAAASGLLPTT-TSVHELLECPVCTNSMYPPIHQC 77


>At5g59400.2 68418.m07444 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 301

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 98  DIFLIISLKWKWFGGGTVLFWPCCFCCR 181
           D+F  + LK +W+G  +V+ +P C   R
Sbjct: 95  DMFDRVELKLRWYGSKSVVKYPRCSLLR 122


>At5g59400.1 68418.m07443 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 299

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 98  DIFLIISLKWKWFGGGTVLFWPCCFCCR 181
           D+F  + LK +W+G  +V+ +P C   R
Sbjct: 95  DMFDRVELKLRWYGSKSVVKYPRCSLLR 122


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +2

Query: 167 CFCCRCELAP 196
           C+CC+CE++P
Sbjct: 560 CYCCKCEVSP 569


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,974,152
Number of Sequences: 28952
Number of extensions: 129126
Number of successful extensions: 402
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -