Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0788
(429 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26890.2 68416.m03365 expressed protein 35 0.020
At3g26890.1 68416.m03364 expressed protein 35 0.020
At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR cla... 29 1.8
At5g63730.1 68418.m07999 IBR domain-containing protein contains ... 28 3.1
At3g63290.2 68416.m07114 expressed protein 27 4.1
At3g63290.1 68416.m07113 expressed protein 27 4.1
At1g14440.2 68414.m01713 zinc finger homeobox family protein / Z... 27 4.1
At1g14440.1 68414.m01712 zinc finger homeobox family protein / Z... 27 4.1
At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 27 5.4
At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family pr... 27 5.4
At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA li... 27 7.1
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 27 7.1
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 27 7.1
At5g59400.2 68418.m07444 expressed protein predicted protein, Ar... 26 9.4
At5g59400.1 68418.m07443 expressed protein predicted protein, Ar... 26 9.4
At2g36720.1 68415.m04505 PHD finger transcription factor, putative 26 9.4
>At3g26890.2 68416.m03365 expressed protein
Length = 649
Score = 35.1 bits (77), Expect = 0.020
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 211 RLHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLH-FSCYYRNTNFIS 35
+L+ FW Q ++ Q+S S P+ G Q ++ K PLH F C Y T+ +
Sbjct: 431 KLNKFWGQKVKTSQMNSDAQSSKSQLRIPMKGRIQLVLSNPEKTPLHTFLCNYDLTDMPA 490
Query: 34 IFKIFL 17
K FL
Sbjct: 491 GTKTFL 496
>At3g26890.1 68416.m03364 expressed protein
Length = 649
Score = 35.1 bits (77), Expect = 0.020
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 211 RLHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLH-FSCYYRNTNFIS 35
+L+ FW Q ++ Q+S S P+ G Q ++ K PLH F C Y T+ +
Sbjct: 431 KLNKFWGQKVKTSQMNSDAQSSKSQLRIPMKGRIQLVLSNPEKTPLHTFLCNYDLTDMPA 490
Query: 34 IFKIFL 17
K FL
Sbjct: 491 GTKTFL 496
>At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1054
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 171 KQHGQNKTVPPPNHFHFREIIKKISILNTKIHYIFHVITETLILFLSSKFSSR 13
+Q +K + + +F E+ + + TK YI H L F S +FSS+
Sbjct: 458 QQTRSSKNLEELGNEYFSELESRSLLQKTKTRYIMHDFINELAQFASGEFSSK 510
>At5g63730.1 68418.m07999 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
domain
Length = 506
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 110 IISLKWKWFGGGTVLFWPCCFCCRCELAPKW 202
++ +K K + GGT FW +C RC A W
Sbjct: 451 LVDVKVKSYNGGTGPFW---YCDRCTYANTW 478
>At3g63290.2 68416.m07114 expressed protein
Length = 303
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 208 LHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLHFSCYYRNT 47
LHP WSQ S +E T S P P N ++ + ++ + F+ + R T
Sbjct: 236 LHPKWSQTFSVSEYTMEHLRSDEVVPRPDLQNIVPPLSSRLRDGMTFAEFSRET 289
>At3g63290.1 68416.m07113 expressed protein
Length = 403
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 208 LHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLHFSCYYRNT 47
LHP WSQ S +E T S P P N ++ + ++ + F+ + R T
Sbjct: 336 LHPKWSQTFSVSEYTMEHLRSDEVVPRPDLQNIVPPLSSRLRDGMTFAEFSRET 389
>At1g14440.2 68414.m01713 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 312
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 214 HRLHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQEN--INIKHKNPLH 71
H +H A++A T N+T P PL GN N + H++P H
Sbjct: 27 HMIHHHDHHAANSAPPTHNNNNTTQPPPMPLHGNGHGNNYDHHHHQDPHH 76
>At1g14440.1 68414.m01712 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 312
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 214 HRLHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQEN--INIKHKNPLH 71
H +H A++A T N+T P PL GN N + H++P H
Sbjct: 27 HMIHHHDHHAANSAPPTHNNNNTTQPPPMPLHGNGHGNNYDHHHHQDPHH 76
>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]; similar to Myosin II heavy
chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
discoideum]
Length = 1029
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 398 SADVAFQKPSAGSSREWSNSLRXGEDRRCSSTRSXN 291
SA F++PS S EWS S G ST S N
Sbjct: 238 SAKSLFEEPSRISESEWSGSSDHGISSTDDSTNSSN 273
>At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family
protein / U-box domain-containing family protein
contains Pfam domain, PF00514:
Armadillo/beta-catenin-like repeats and Pfam, PF04564:
U-box domain
Length = 771
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 270 EDEPPXKIXAPGRRAPPVLAAXKTIAPLTRTTSRR 374
E+ P + AP PV A + PLT++ SRR
Sbjct: 718 EEAPRKTVSAPMAIPAPVSAPESEVKPLTKSISRR 752
>At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA
ligase identical to SP|Q39230 Seryl-tRNA synthetase (EC
6.1.1.11) (Serine--tRNA ligase) (SerRS) {Arabidopsis
thaliana}
Length = 451
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 188 VRIGSRSNTARTKQYLHRTISTLGKLSR 105
+R G + + +TKQY+H STL R
Sbjct: 375 IRYGQKKSNEQTKQYVHMLNSTLTATER 402
>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 327
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 360 TTSRRLLECYVCAYKTDTPIRSC 428
T+ LLEC VC Y PI C
Sbjct: 56 TSVYELLECPVCTYSMYPPIHQC 78
>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 326
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 321 VLAAXKTIAPLTRTTSRRLLECYVCAYKTDTPIRSC 428
V AA + P T T+ LLEC VC PI C
Sbjct: 43 VNAAASGLLPTT-TSVHELLECPVCTNSMYPPIHQC 77
>At5g59400.2 68418.m07444 expressed protein predicted protein,
Arabidopsis thaliana
Length = 301
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 98 DIFLIISLKWKWFGGGTVLFWPCCFCCR 181
D+F + LK +W+G +V+ +P C R
Sbjct: 95 DMFDRVELKLRWYGSKSVVKYPRCSLLR 122
>At5g59400.1 68418.m07443 expressed protein predicted protein,
Arabidopsis thaliana
Length = 299
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 98 DIFLIISLKWKWFGGGTVLFWPCCFCCR 181
D+F + LK +W+G +V+ +P C R
Sbjct: 95 DMFDRVELKLRWYGSKSVVKYPRCSLLR 122
>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
Length = 1007
Score = 26.2 bits (55), Expect = 9.4
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = +2
Query: 167 CFCCRCELAP 196
C+CC+CE++P
Sbjct: 560 CYCCKCEVSP 569
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,974,152
Number of Sequences: 28952
Number of extensions: 129126
Number of successful extensions: 402
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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