BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0788 (429 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g26890.2 68416.m03365 expressed protein 35 0.020 At3g26890.1 68416.m03364 expressed protein 35 0.020 At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR cla... 29 1.8 At5g63730.1 68418.m07999 IBR domain-containing protein contains ... 28 3.1 At3g63290.2 68416.m07114 expressed protein 27 4.1 At3g63290.1 68416.m07113 expressed protein 27 4.1 At1g14440.2 68414.m01713 zinc finger homeobox family protein / Z... 27 4.1 At1g14440.1 68414.m01712 zinc finger homeobox family protein / Z... 27 4.1 At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 27 5.4 At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family pr... 27 5.4 At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA li... 27 7.1 At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 27 7.1 At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 27 7.1 At5g59400.2 68418.m07444 expressed protein predicted protein, Ar... 26 9.4 At5g59400.1 68418.m07443 expressed protein predicted protein, Ar... 26 9.4 At2g36720.1 68415.m04505 PHD finger transcription factor, putative 26 9.4 >At3g26890.2 68416.m03365 expressed protein Length = 649 Score = 35.1 bits (77), Expect = 0.020 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = -3 Query: 211 RLHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLH-FSCYYRNTNFIS 35 +L+ FW Q ++ Q+S S P+ G Q ++ K PLH F C Y T+ + Sbjct: 431 KLNKFWGQKVKTSQMNSDAQSSKSQLRIPMKGRIQLVLSNPEKTPLHTFLCNYDLTDMPA 490 Query: 34 IFKIFL 17 K FL Sbjct: 491 GTKTFL 496 >At3g26890.1 68416.m03364 expressed protein Length = 649 Score = 35.1 bits (77), Expect = 0.020 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = -3 Query: 211 RLHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLH-FSCYYRNTNFIS 35 +L+ FW Q ++ Q+S S P+ G Q ++ K PLH F C Y T+ + Sbjct: 431 KLNKFWGQKVKTSQMNSDAQSSKSQLRIPMKGRIQLVLSNPEKTPLHTFLCNYDLTDMPA 490 Query: 34 IFKIFL 17 K FL Sbjct: 491 GTKTFL 496 >At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR class), putative domain signature NBS-LRR exists, suggestive of a disease resistance protein. Length = 1054 Score = 28.7 bits (61), Expect = 1.8 Identities = 15/53 (28%), Positives = 25/53 (47%) Frame = -1 Query: 171 KQHGQNKTVPPPNHFHFREIIKKISILNTKIHYIFHVITETLILFLSSKFSSR 13 +Q +K + + +F E+ + + TK YI H L F S +FSS+ Sbjct: 458 QQTRSSKNLEELGNEYFSELESRSLLQKTKTRYIMHDFINELAQFASGEFSSK 510 >At5g63730.1 68418.m07999 IBR domain-containing protein contains similarity to Swiss-Prot:Q94981 ariadne-1 protein (Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR domain Length = 506 Score = 27.9 bits (59), Expect = 3.1 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +2 Query: 110 IISLKWKWFGGGTVLFWPCCFCCRCELAPKW 202 ++ +K K + GGT FW +C RC A W Sbjct: 451 LVDVKVKSYNGGTGPFW---YCDRCTYANTW 478 >At3g63290.2 68416.m07114 expressed protein Length = 303 Score = 27.5 bits (58), Expect = 4.1 Identities = 16/54 (29%), Positives = 25/54 (46%) Frame = -3 Query: 208 LHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLHFSCYYRNT 47 LHP WSQ S +E T S P P N ++ + ++ + F+ + R T Sbjct: 236 LHPKWSQTFSVSEYTMEHLRSDEVVPRPDLQNIVPPLSSRLRDGMTFAEFSRET 289 >At3g63290.1 68416.m07113 expressed protein Length = 403 Score = 27.5 bits (58), Expect = 4.1 Identities = 16/54 (29%), Positives = 25/54 (46%) Frame = -3 Query: 208 LHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLHFSCYYRNT 47 LHP WSQ S +E T S P P N ++ + ++ + F+ + R T Sbjct: 336 LHPKWSQTFSVSEYTMEHLRSDEVVPRPDLQNIVPPLSSRLRDGMTFAEFSRET 389 >At1g14440.2 68414.m01713 zinc finger homeobox family protein / ZF-HD homeobox family protein Length = 312 Score = 27.5 bits (58), Expect = 4.1 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Frame = -3 Query: 214 HRLHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQEN--INIKHKNPLH 71 H +H A++A T N+T P PL GN N + H++P H Sbjct: 27 HMIHHHDHHAANSAPPTHNNNNTTQPPPMPLHGNGHGNNYDHHHHQDPHH 76 >At1g14440.1 68414.m01712 zinc finger homeobox family protein / ZF-HD homeobox family protein Length = 312 Score = 27.5 bits (58), Expect = 4.1 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Frame = -3 Query: 214 HRLHPFWSQFASAAEATRPEQNSTSTEPFPL*GNYQEN--INIKHKNPLH 71 H +H A++A T N+T P PL GN N + H++P H Sbjct: 27 HMIHHHDHHAANSAPPTHNNNNTTQPPPMPLHGNGHGNNYDHHHHQDPHH 76 >At1g63300.1 68414.m07156 expressed protein similar to Intracellular protein transport protein USO1 (Swiss-Prot:P25386) [Saccharomyces cerevisiae]; similar to Myosin II heavy chain, non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum] Length = 1029 Score = 27.1 bits (57), Expect = 5.4 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -2 Query: 398 SADVAFQKPSAGSSREWSNSLRXGEDRRCSSTRSXN 291 SA F++PS S EWS S G ST S N Sbjct: 238 SAKSLFEEPSRISESEWSGSSDHGISSTDDSTNSSN 273 >At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain Length = 771 Score = 27.1 bits (57), Expect = 5.4 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 270 EDEPPXKIXAPGRRAPPVLAAXKTIAPLTRTTSRR 374 E+ P + AP PV A + PLT++ SRR Sbjct: 718 EEAPRKTVSAPMAIPAPVSAPESEVKPLTKSISRR 752 >At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA ligase identical to SP|Q39230 Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) {Arabidopsis thaliana} Length = 451 Score = 26.6 bits (56), Expect = 7.1 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 188 VRIGSRSNTARTKQYLHRTISTLGKLSR 105 +R G + + +TKQY+H STL R Sbjct: 375 IRYGQKKSNEQTKQYVHMLNSTLTATER 402 >At4g27880.1 68417.m04002 seven in absentia (SINA) family protein similar to siah-1A protein [Mus musculus] GI:297035; contains Pfam profile PF03145: Seven in absentia protein family Length = 327 Score = 26.6 bits (56), Expect = 7.1 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +3 Query: 360 TTSRRLLECYVCAYKTDTPIRSC 428 T+ LLEC VC Y PI C Sbjct: 56 TSVYELLECPVCTYSMYPPIHQC 78 >At3g61790.1 68416.m06933 seven in absentia (SINA) family protein similar to siah-1A protein [Mus musculus] GI:297035; contains Pfam profile PF03145: Seven in absentia protein family Length = 326 Score = 26.6 bits (56), Expect = 7.1 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +3 Query: 321 VLAAXKTIAPLTRTTSRRLLECYVCAYKTDTPIRSC 428 V AA + P T T+ LLEC VC PI C Sbjct: 43 VNAAASGLLPTT-TSVHELLECPVCTNSMYPPIHQC 77 >At5g59400.2 68418.m07444 expressed protein predicted protein, Arabidopsis thaliana Length = 301 Score = 26.2 bits (55), Expect = 9.4 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +2 Query: 98 DIFLIISLKWKWFGGGTVLFWPCCFCCR 181 D+F + LK +W+G +V+ +P C R Sbjct: 95 DMFDRVELKLRWYGSKSVVKYPRCSLLR 122 >At5g59400.1 68418.m07443 expressed protein predicted protein, Arabidopsis thaliana Length = 299 Score = 26.2 bits (55), Expect = 9.4 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +2 Query: 98 DIFLIISLKWKWFGGGTVLFWPCCFCCR 181 D+F + LK +W+G +V+ +P C R Sbjct: 95 DMFDRVELKLRWYGSKSVVKYPRCSLLR 122 >At2g36720.1 68415.m04505 PHD finger transcription factor, putative Length = 1007 Score = 26.2 bits (55), Expect = 9.4 Identities = 6/10 (60%), Positives = 10/10 (100%) Frame = +2 Query: 167 CFCCRCELAP 196 C+CC+CE++P Sbjct: 560 CYCCKCEVSP 569 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,974,152 Number of Sequences: 28952 Number of extensions: 129126 Number of successful extensions: 402 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 394 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 402 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 675111616 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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