Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0787
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6Z6Y5 Cluster: Putative uncharacterized protein P0576F...    42   0.008
UniRef50_Q8H3K2 Cluster: Putative uncharacterized protein P0428D...    32   6.6  

>UniRef50_Q6Z6Y5 Cluster: Putative uncharacterized protein
           P0576F08.28; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0576F08.28 - Oryza sativa subsp. japonica (Rice)
          Length = 143

 Score = 41.5 bits (93), Expect = 0.008
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 127 WKWFGGGTVLFWPCCFCCRC 186
           W W G G +L WPCC CC C
Sbjct: 25  WCWSGNGPILLWPCCCCCCC 44


>UniRef50_Q8H3K2 Cluster: Putative uncharacterized protein
           P0428D12.111; n=6; Oryza sativa|Rep: Putative
           uncharacterized protein P0428D12.111 - Oryza sativa
           subsp. japonica (Rice)
          Length = 515

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 182 RQQKQHGQNKTVPPPNHFHFREI-IKKISILNTKIHYIFHVITETLIL 42
           R +K HG+ +T+PP  H+H +E+ I        ++    H++  +++L
Sbjct: 385 RYRKAHGKLRTLPPCPHYHLKEVNIAGFYGQKDQLELAHHILRNSVVL 432


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 350,171,094
Number of Sequences: 1657284
Number of extensions: 5089011
Number of successful extensions: 14924
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14910
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)