BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0787 (449 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 27 1.0 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 4.1 SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 25 7.1 SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi... 24 9.4 SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 24 9.4 >SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3|||Manual Length = 465 Score = 27.5 bits (58), Expect = 1.0 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = +1 Query: 82 IFVFNIDIFLIISLKWKWFGGGTVLFWPCCFCCRC 186 +F F+I +FL++ L + +V FW F C Sbjct: 403 VFAFSISVFLVLHLTQAFHVCPSVTFWKTLFMSLC 437 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 25.4 bits (53), Expect = 4.1 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 199 LEPVRIGSRSNTARTKQYLHRTISTLGKLSRK 104 L+P GSRS+ ++ H + ++LG + RK Sbjct: 469 LQPTATGSRSSRLSFSRHGHGSQTSLGSIKRK 500 >SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 468 Score = 24.6 bits (51), Expect = 7.1 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = -1 Query: 122 REIIKKISILNTKIHYIFHVITETLILFLSSKFSS 18 R + ++ +++ IH+I V L +F SSK++S Sbjct: 182 RVSLLQLYLISWTIHFINFVFHSLLAVFFSSKYTS 216 >SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 309 Score = 24.2 bits (50), Expect = 9.4 Identities = 10/37 (27%), Positives = 20/37 (54%) Frame = -1 Query: 191 SSHRQQKQHGQNKTVPPPNHFHFREIIKKISILNTKI 81 S + Q+ +HG+N + F F ++ +S+L T + Sbjct: 218 SPYSQRGEHGENLWLAGSQQFQFGAEVQVVSLLYTAL 254 >SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 274 Score = 24.2 bits (50), Expect = 9.4 Identities = 10/40 (25%), Positives = 21/40 (52%) Frame = -1 Query: 191 SSHRQQKQHGQNKTVPPPNHFHFREIIKKISILNTKIHYI 72 ++H Q++QH +N+ + H++ + K + L H I Sbjct: 72 TTHLQKRQHSENRFGVRVENLHYQVLEKDVLSLFENFHPI 111 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,426,392 Number of Sequences: 5004 Number of extensions: 20842 Number of successful extensions: 58 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 58 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 166231220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -