Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0787
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0451 - 3404749-3405171,3405444-3405599,3405711-3406583,340...    32   0.24 
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    28   4.0  
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92...    28   4.0  
01_05_0026 - 17315805-17315831,17315930-17316010,17316809-173168...    27   7.0  
08_01_1067 + 10893720-10894585,10895125-10895348,10895518-108957...    27   9.2  

>07_01_0451 -
           3404749-3405171,3405444-3405599,3405711-3406583,
           3406847-3406942
          Length = 515

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 182 RQQKQHGQNKTVPPPNHFHFREI-IKKISILNTKIHYIFHVITETLIL 42
           R +K HG+ +T+PP  H+H +E+ I        ++    H++  +++L
Sbjct: 385 RYRKAHGKLRTLPPCPHYHLKEVNIAGFYGQKDQLELAHHILRNSVVL 432


>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 140  PNHFHFREIIKKISILN 90
            P +FHFR+I++KI +L+
Sbjct: 1380 PENFHFRDIVEKIELLS 1396


>02_01_0125 +
           920128-920392,920491-921839,921921-922084,922340-922370,
           922534-922565,922730-923060,923210-923713
          Length = 891

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 140 PNHFHFREIIKKISILNTKIHYIFHVITETLIL 42
           PN F FRE + K ++  +   Y   V T+ L L
Sbjct: 475 PNRFSFREFVTKDNVTGSMKGYCIDVFTQALAL 507


>01_05_0026 -
           17315805-17315831,17315930-17316010,17316809-17316871,
           17317542-17317620,17317711-17317928,17319688-17319879
          Length = 219

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 188 SHRQQKQHGQNKTVPPPNHFH 126
           +H+QQ Q     T PPP H H
Sbjct: 33  NHQQQPQPPPQATPPPPQHHH 53


>08_01_1067 +
           10893720-10894585,10895125-10895348,10895518-10895708,
           10896082-10896390
          Length = 529

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 323 VLAAXKTIAPLXRTTSRRLLECYVCAYKTDTPIRSCLDP 439
           V+    T A   RTT  R + C+ C++  D P+R    P
Sbjct: 245 VVVGDMTYANQYRTTGGRGVPCFSCSF-PDAPLRESYQP 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,666,731
Number of Sequences: 37544
Number of extensions: 145448
Number of successful extensions: 433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)