Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0787
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR cla...    29   1.9  
At3g26890.2 68416.m03365 expressed protein                             27   4.4  
At3g26890.1 68416.m03364 expressed protein                             27   4.4  
At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA li...    27   7.7  
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein...    27   7.7  

>At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1054

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -1

Query: 173 KQHGQNKTVPPPNHFHFREIIKKISILNTKIHYIFHVITETLILFLSSKFSSR 15
           +Q   +K +    + +F E+  +  +  TK  YI H     L  F S +FSS+
Sbjct: 458 QQTRSSKNLEELGNEYFSELESRSLLQKTKTRYIMHDFINELAQFASGEFSSK 510


>At3g26890.2 68416.m03365 expressed protein
          Length = 649

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 198 WSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLH-FSCYY 58
           W Q    ++     Q+S S    P+ G  Q  ++   K PLH F C Y
Sbjct: 436 WGQKVKTSQMNSDAQSSKSQLRIPMKGRIQLVLSNPEKTPLHTFLCNY 483


>At3g26890.1 68416.m03364 expressed protein
          Length = 649

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 198 WSQFASAAEATRPEQNSTSTEPFPL*GNYQENINIKHKNPLH-FSCYY 58
           W Q    ++     Q+S S    P+ G  Q  ++   K PLH F C Y
Sbjct: 436 WGQKVKTSQMNSDAQSSKSQLRIPMKGRIQLVLSNPEKTPLHTFLCNY 483


>At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA
           ligase identical to SP|Q39230 Seryl-tRNA synthetase (EC
           6.1.1.11) (Serine--tRNA ligase) (SerRS) {Arabidopsis
           thaliana}
          Length = 451

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 190 VRIGSRSNTARTKQYLHRTISTLGKLSR 107
           +R G + +  +TKQY+H   STL    R
Sbjct: 375 IRYGQKKSNEQTKQYVHMLNSTLTATER 402


>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
           similar to siah-1A protein [Mus musculus] GI:297035;
           contains Pfam profile PF03145: Seven in absentia protein
           family
          Length = 327

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 362 TTSRRLLECYVCAYKTDTPIRSC 430
           T+   LLEC VC Y    PI  C
Sbjct: 56  TSVYELLECPVCTYSMYPPIHQC 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,619,848
Number of Sequences: 28952
Number of extensions: 114306
Number of successful extensions: 326
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)