Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0785
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin ...    29   2.3  
At5g11620.1 68418.m01359 SWIM zinc finger family protein / mitog...    28   4.0  
At2g31440.1 68415.m03841 expressed protein identical to cDNA end...    28   5.3  
At2g24460.1 68415.m02923 expressed protein                             27   7.0  
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa...    27   9.3  
At1g13870.1 68414.m01628 expressed protein similar to KTI12 prot...    27   9.3  

>At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin
           family protein low similarity to Ser/Thr protein kinase
           [Zea mays] GI:2598067; contains Pfam profile PF01453:
           Lectin (probable mannose binding)
          Length = 443

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 121 GKCACCPACVTLLGEGATCKIYS 189
           G+C  CP+ + LLG   TCKI S
Sbjct: 330 GQCNACPSDIGLLGWDETCKIPS 352


>At5g11620.1 68418.m01359 SWIM zinc finger family protein /
           mitogen-activated protein kinase kinase kinase
           (MAPKKK)-related contains weak similarity to
           Swiss-Prot:P53349 mitogen-activated protein kinase
           kinase kinase 1 (MAPK/ERK kinase kinase 1, MEK kinase 1,
           MEKK 1) [Mus musculus]; contains Pfam profile PF04434:
           SWIM zinc finger
          Length = 273

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 166 GATCKIYSKELGETPSAVCKEPLKCIKRV 252
           GATC +Y+  L  TP+  C +  K  K +
Sbjct: 53  GATCNVYTVTLMATPTCTCPDRKKPCKHI 81


>At2g31440.1 68415.m03841 expressed protein identical to cDNA
           endonuclease III homologue (nth1 gene) GI:11181951
          Length = 250

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 93  LRANKWWLYAWIFFTVVC 40
           L+AN WW YA +  T VC
Sbjct: 59  LKANVWWPYALLVITSVC 76


>At2g24460.1 68415.m02923 expressed protein
          Length = 150

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 550 SLQIATIIRDL*EYIXILDELHTLSRYPDRVT 455
           S  I T+ RDL EY   +D + +L  YPD  T
Sbjct: 25  STVIITLDRDLEEYDENVDSIKSLGSYPDSST 56


>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger)
           family protein / pentatricopeptide (PPR)
           repeat-containing protein contains Pfam domains PF01535:
           PPR repeat and PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 1208

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -2

Query: 548 SPNCHNY*RLMRIYNXTRRV----TYIVPIS*QGYLYNTYYFXSFLFGLLK 408
           +PN   Y  ++++Y  TRR+       + +  +GY Y+ Y + + +  L+K
Sbjct: 202 TPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIK 252


>At1g13870.1 68414.m01628 expressed protein similar to KTI12 protein
           (SP:P34253) {Saccharomyces cerevisiae}; contains Prosite
           PS00070: Aldehyde dehydrogenases cysteine active site
          Length = 302

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 508 IXILDELHTLSRYPDRVTCIIHTISXRFCSVY 413
           I I+D L+++  Y   + CI      R+C VY
Sbjct: 76  IVIVDSLNSIKGYRYELWCIARAAGIRYCVVY 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,940,519
Number of Sequences: 28952
Number of extensions: 224249
Number of successful extensions: 473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)