Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0779
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 30 1.7
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 29 2.3
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 29 3.0
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 29 3.0
06_02_0037 - 10856616-10856915,10857527-10860238 29 3.0
12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583... 27 9.3
10_08_0354 - 17104223-17106061,17106770-17106794,17107317-171075... 27 9.3
03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451 27 9.3
03_03_0208 + 15459260-15459922 27 9.3
02_05_0188 + 26587267-26587446,26587733-26587979,26588358-26588665 27 9.3
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -1
Query: 304 RILRRHHEAPRCPLLRCSSTGFCCCS---ESSLVKEVKA 197
R LR H E P ++CS G C CS +S+L K +KA
Sbjct: 230 RHLRAHEEVPSTERIKCSFEG-CECSFSNKSNLTKHIKA 267
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 257 PEEWAPWSFVVPAKNPHAPPP 319
P W+P S V P NPH+ PP
Sbjct: 199 PPPWSPHSGVPPPWNPHSAPP 219
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 299 NPHAPPPVSVKTTGPVWDIGQVLKAARLLCKP 394
+P PPP+S GP +D Q+ LL +P
Sbjct: 55 SPAQPPPLSNLLAGPAFDAEQIWSQIELLSRP 86
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 299 NPHAPPPVSVKTTGPVWDIGQVLKAARLLCKP 394
+P PPP+S GP +D Q+ LL +P
Sbjct: 55 SPAQPPPLSNLLAGPAFDAEQIWSQIELLSRP 86
>06_02_0037 - 10856616-10856915,10857527-10860238
Length = 1003
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/56 (32%), Positives = 22/56 (39%)
Frame = +3
Query: 126 RMHRSHASKNQINNMRPMILEDRTAFTSLTNDDSEQQQKPVEEHRRSGHRGASWCL 293
R H S A N +NN R MIL T ++T + V GH G L
Sbjct: 416 RQHSSEAHANPLNNGRSMILLLATLTATVTYQAGLEPPGGVWRDNEGGHNGGDLIL 471
>12_01_0684 +
5828947-5829012,5831123-5832103,5832200-5832326,
5832623-5832705,5832752-5832917,5833337-5833399,
5833624-5833733,5834227-5834276,5834528-5834664,
5835180-5835281,5835871-5835988,5836575-5836627,
5836710-5836813,5836910-5836972,5837375-5837503,
5837508-5837605,5838446-5838500,5839260-5839311,
5839996-5840113,5841906-5842035,5842156-5842437
Length = 1028
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 278 SFVVPAKNP-HAPPPVSVKTTGPVWDIGQVLKAARLLC 388
SF + KN P P S+ G + DI + L+ A LLC
Sbjct: 364 SFGITVKNAIRTPAPTSLVKFGQLEDIRRYLEVANLLC 401
>10_08_0354 -
17104223-17106061,17106770-17106794,17107317-17107561,
17108432-17108677
Length = 784
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = -1
Query: 631 NSCVARSCSALGLAFPATSR*TPSGIAKLCDGCR--CTVGSQ 512
N V R C ALGL A SR + G C C C G +
Sbjct: 393 NKAVRRGCEALGLRVEAVSRNSSEG--HFCGSCNLGCPTGEK 432
>03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451
Length = 228
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 311 PPPVSVKTTGPVWDIGQVLKAARLLCKPPQQVDFEDEQE 427
PPPV+ + P + AA L PPQQ D D +
Sbjct: 133 PPPVAFRRKPPAREAPPPPPAAEKLSPPPQQHDDSDHNK 171
>03_03_0208 + 15459260-15459922
Length = 220
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 416 PRNRLAVVACREDEPLLRP 360
PR RL+ CRE PLL P
Sbjct: 170 PRERLSSAPCREASPLLEP 188
>02_05_0188 + 26587267-26587446,26587733-26587979,26588358-26588665
Length = 244
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 285 WCLRRILMHHHRFPLKLPAQFG 350
WC RR HHH +P +PA G
Sbjct: 114 WCRRRADGHHHHYP-DVPAWIG 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,352,757
Number of Sequences: 37544
Number of extensions: 377217
Number of successful extensions: 1105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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