Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0777
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0308 + 2434642-2434736,2435176-2435245,2435435-2435566,243...    39   0.003
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691...    30   1.3  
02_01_0151 + 1067067-1067222,1067586-1067690,1067904-1067990,106...    29   1.7  
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686     29   3.1  

>05_01_0308 +
           2434642-2434736,2435176-2435245,2435435-2435566,
           2435659-2435722,2435786-2435855,2435952-2436036,
           2437572-2437628,2437894-2438010,2438267-2438337,
           2438703-2439045
          Length = 367

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -3

Query: 364 KMLDWNEIT--DLPNKRPDVILGADIVYDPSILKPLCNV 254
           K L W E +  DL + RPD++LGADI+YDP  +  L  V
Sbjct: 234 KYLSWEETSESDLWDCRPDLVLGADIIYDPVCVPHLIRV 272


>10_08_1052 -
           22567937-22568329,22568436-22568669,22568787-22569111,
           22569239-22569484,22569576-22569916,22570070-22570150,
           22570275-22570394,22570549-22570650,22570900-22571035,
           22571210-22571362,22572605-22572906
          Length = 810

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 113 HLLVALIFHNENYRFPKLVKNFQRLTHFL*YWRYKCSRH 229
           H L     +N N R+ KLVK  +RL ++L Y++ K  RH
Sbjct: 226 HYLGQQAVYNAN-RYAKLVKKKERLQNWLDYYQLKFERH 263


>02_01_0151 +
           1067067-1067222,1067586-1067690,1067904-1067990,
           1068071-1068121,1068265-1068291,1068292-1068385,
           1068610-1068845
          Length = 251

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -3

Query: 355 DWNEIT-DLPNKRPDVILGADIVYD 284
           +W+E T DL    PDVILGAD++YD
Sbjct: 150 EWDEPTFDL---HPDVILGADVLYD 171


>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
          Length = 959

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 270 FSIEGSYTISAPSITSGLLFGRSVISFQSNIL 365
           F  E   T+SAP++  G++FG+ +   +S ++
Sbjct: 301 FKCEFDLTLSAPTVEQGMVFGKELFGQESGLV 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,957
Number of Sequences: 37544
Number of extensions: 225621
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)