Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0777
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_44105| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.42)            28   4.1  
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  

>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 267 GFSIEGSYTISAPSITSGLLFGRSVISFQSNILTSVSESPVKIGPAV 407
           GF  EG Y + AP +T G + GR+ ++    +L ++   P+ +GP +
Sbjct: 339 GF-FEGCYVLLAPVLT-GDIVGRNNMATGVGVLFAIKSVPLTLGPPI 383


>SB_44105| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.42)
          Length = 326

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 409 QRLATLLTLSNSYVVPSKIV*FSDKYPIRN 498
           Q +A +LTL   YVV  ++  F+ KY IRN
Sbjct: 245 QCMAGILTLHKHYVVNGELKKFTRKYEIRN 274


>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/63 (23%), Positives = 35/63 (55%)
 Frame = +1

Query: 274 VLKDHIQYLHQVLHRAFYLVDR*FHSNLTS*HLSVKVPSKSVQPFQRLATLLTLSNSYVV 453
           +L+D+  +  +++ +   L++  F+S+L    +   +PS++++   R    L  S S ++
Sbjct: 791 ILRDYSNHRQELIGKIVNLMEDVFNSHLARWEVRAPMPSQAMRGIVRQIIKLHESLSAIL 850

Query: 454 PSK 462
           PSK
Sbjct: 851 PSK 853


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,679,205
Number of Sequences: 59808
Number of extensions: 278530
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)