Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0773
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   4e-18
SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.90 
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     29   2.1  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 42/75 (56%), Positives = 53/75 (70%)
 Frame = +3

Query: 351 LQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITIHDKDTYLIF* 530
           L +RNE LFF +L    E+ MPIVYTPTVGLAC+K+G+++RRPRGL+I+IHDK       
Sbjct: 125 LLERNESLFFRVLFDYTEELMPIVYTPTVGLACRKYGMIFRRPRGLFISIHDKGHIRDIV 184

Query: 531 RTGPEHAVRAIVFTD 575
              P   V+AIV TD
Sbjct: 185 SNWPTTEVKAIVMTD 199



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +2

Query: 158 LRGIDHIKDPRLNKGLAFTLEERKL 232
           +RG D ++D  LNKGLAFTLEER++
Sbjct: 60  IRGTDIMRDSHLNKGLAFTLEERQI 84


>SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 390 DCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITIHDKD 512
           +CD + F+ + + PTV +   K  ++   P G+Y+    KD
Sbjct: 227 ECDADTFVTVTFRPTVPIVPDKHSVLDHVPVGIYVPNKFKD 267


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +2

Query: 116 NMHEITGNIICPNML----RGIDHIKDPRLNKGLAFTLEERK 229
           N H   G ++ P  +      +DH+KDP+    LA TL E K
Sbjct: 373 NGHHCGGTLVSPQWVVTAAHCVDHVKDPKNYNELAITLGEHK 414


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,541,850
Number of Sequences: 59808
Number of extensions: 326962
Number of successful extensions: 575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)