Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0771
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   0.30 
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   8.4  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -3

Query: 296 LENRENILIELIYVLQXSSSAANVTSTR--SPRDSRP*KPADIFAWKLFQHSENCSSDAM 123
           L +  N +   ++V   S+S+  + S    +  +S    PA I ++ L QH   CSS   
Sbjct: 182 LRDSPNYIKPQLHVSTGSTSSPTIASATYTNSANSSIWSPASIDSFTLEQHRSWCSSSQP 241

Query: 122 IATTRRGT 99
           + +T   T
Sbjct: 242 VLSTTNST 249


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 41  SYIFFKCFSYRNYKYK 88
           SY+ F  F  RN +YK
Sbjct: 145 SYLLFDYFVQRNQEYK 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,636
Number of Sequences: 336
Number of extensions: 2750
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)