Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0771
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 43 2e-04
07_01_1036 + 9021395-9021658,9024214-9024690 41 0.001
08_02_1304 - 26008105-26009070 34 0.11
08_02_1310 - 26037025-26038074 33 0.25
08_02_1251 - 25592537-25593380,25593589-25593893 33 0.25
08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546 33 0.25
06_01_1008 - 7853089-7854147 33 0.25
10_08_0082 + 14713989-14714046,14714109-14714953 31 0.99
08_01_0797 + 7711772-7712869 31 0.99
08_01_0801 - 7750548-7751708 30 1.3
08_01_0027 - 195321-195932,197206-197415 30 1.7
10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886 29 4.0
07_03_0351 + 17082571-17083087,17083135-17083148 29 4.0
10_08_0129 - 15025076-15025858,15025951-15026283 28 5.3
10_08_0122 - 14982676-14983043,14983957-14985145 28 5.3
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 28 5.3
10_08_0119 - 14952786-14953931,14954709-14954831 28 7.0
10_08_0059 + 14529885-14530991 27 9.2
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 27 9.2
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 421
HKL+LS+ S F +MF M + VF +DV A L+QFMY GE+ V EE+
Sbjct: 366 HKLILSLWSMTFDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGELKVDIEEI 422
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 421
+ H+++L+ SP F+ M + M ++ I+ + DVS+ LR + +MY E + ++
Sbjct: 81 VPAHRVILASRSPVFRAMLENEMEESRSGIIKIYDVSYDVLRAFVHYMYTAEALLDEQMA 140
Query: 422 ASFISTAEQLQVXGL 466
+ + AE+ +V L
Sbjct: 141 SDLLVLAEKYEVKNL 155
>08_02_1304 - 26008105-26009070
Length = 321
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 257 HKLVLSVCSPYFQE--MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASF 430
H+ VL+ SP F+ + M P V L+D+ + R LL F+Y +V Q E +S
Sbjct: 168 HRAVLAARSPVFRAELLGSMAEATMPCVTLRDIEPATFRALLHFVY---TDVLQIEGSSS 224
Query: 431 ISTAEQLQ 454
ST + LQ
Sbjct: 225 TSTTDLLQ 232
>08_02_1310 - 26037025-26038074
Length = 349
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASF 430
H+ VL+ SP F+ M P V L+D+ +A R +L F+Y + +ELA F
Sbjct: 193 HRAVLAARSPVFKAALFGSMAEATAPSVALRDMDPAAFRAVLHFIYTDALPDDIDELAGF 252
>08_02_1251 - 25592537-25593380,25593589-25593893
Length = 382
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMFKMNPTQHPI--VFLKDVSHSALRDLLQFMYQGE 397
H+ +L+VCSP F+ + + + + L D+ + LL FMY G+
Sbjct: 238 HRALLAVCSPVFKALLLSSTAEAAACSITLNDIKPAMFEALLHFMYTGD 286
>08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546
Length = 290
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 230 WLPKSXIATHKLVLSVCSPYFQ-EMF-KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVN 403
++ + A HK+VL++ SP F+ E+F M ++ +KD+ + LL F+Y ++
Sbjct: 124 YVGEDTFAAHKVVLAMRSPVFKAELFGPMREAGAQVLPIKDIQPDVFKALLHFIYTDSLS 183
Query: 404 V 406
+
Sbjct: 184 I 184
>06_01_1008 - 7853089-7854147
Length = 352
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQG 394
HK++L+ SP F F M + V +KD+ S + +L F+Y G
Sbjct: 191 HKIILAARSPVFMAEFFGPMKESSSQCVEIKDIEASVFKAMLHFIYTG 238
>10_08_0082 + 14713989-14714046,14714109-14714953
Length = 300
Score = 30.7 bits (66), Expect = 0.99
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQE----MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQE 415
+A H+ VL+ SP F+ + K T V ++D+ + LL+FMY + +E
Sbjct: 141 LAAHRCVLAARSPVFKAELYGLMKEGGTAAGAVHIEDIEPRVFKVLLRFMYTDSLPEMEE 200
Query: 416 E 418
E
Sbjct: 201 E 201
>08_01_0797 + 7711772-7712869
Length = 365
Score = 30.7 bits (66), Expect = 0.99
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMY 388
A HKLVL+ SP F+ F +M + +KD+ S R LL F+Y
Sbjct: 204 AAHKLVLAARSPVFKAEFYGEMIERGTFSIDIKDMQPSVFRALLHFIY 251
>08_01_0801 - 7750548-7751708
Length = 386
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQ-EMFKM--NPTQHPIVFLKDVSHSALRDLLQFMYQGEVNV 406
+ HKLVL++ SP F+ E+ + P PI + D+ + R LLQF+Y + V
Sbjct: 213 SVHKLVLAMRSPVFKAELCGLLREPGTQPITIV-DMQPAVFRALLQFIYTDQFPV 266
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQ 412
+ HK +L+ CSP F+ MF + + + + D+ + L+ F+Y G + + Q
Sbjct: 119 LKAHKAILASCSPVFESMFLHDLKEKESSTININDMCLESCSALIGFIY-GTIKLDQ 174
>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
Length = 334
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQ-EMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 418
A H+ VL+ SP F E+F + + +V + D+ + LL+FMY + +EE
Sbjct: 173 AAHRCVLAAQSPVFSAELFGPMKDSDRAGVVRIDDMEAQVFKALLRFMYTDSLPEMEEE 231
>07_03_0351 + 17082571-17083087,17083135-17083148
Length = 176
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = -3
Query: 278 ILIELIYVLQXSSSAANVTSTRSPRDSRP*KPADIFAWKLFQHSENCSS 132
+L+ L+++L +++ A T P + +P + D+F +LF + N S+
Sbjct: 9 LLLLLLFLLAAATATATATGNALPPEPKPARWPDVFHARLFTNLTNHSA 57
>10_08_0129 - 15025076-15025858,15025951-15026283
Length = 371
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +2
Query: 251 ATHKLVLSVCSPYF-QEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGE-VNVKQE 415
A H+LVL+V SP F E F K + ++ + D+ + LL F+Y + + QE
Sbjct: 179 AAHRLVLAVRSPVFVAEHFGPMKEGVNVNDVIEINDMDAQVFKALLNFIYTDTLLEMDQE 238
Query: 416 ELAS 427
E A+
Sbjct: 239 EDAT 242
>10_08_0122 - 14982676-14983043,14983957-14985145
Length = 518
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +2
Query: 251 ATHKLVLSVCSPYF-QEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGE-VNVKQE 415
A H+LVL+V SP F E F K + ++ + D+ + LL F+Y + + QE
Sbjct: 207 AAHRLVLAVRSPVFVAEHFGPMKEGVNVNDVIEINDMDAQVFKALLNFIYTDTLLEMDQE 266
Query: 416 ELAS 427
E A+
Sbjct: 267 EDAT 270
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 278 CSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVN-VKQEEL 421
C P + F T++P+VFL+ + + DLLQ + V+ K+ EL
Sbjct: 253 CEPRKEIFFTERNTENPLVFLRFLVSTPWGDLLQIKFSRRVHRTKRLEL 301
>10_08_0119 - 14952786-14953931,14954709-14954831
Length = 422
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQ-EMFK-MNPTQHPIVFLKDVSHSALRDLLQFMY 388
A H+LVL+ SP F+ E+FK M ++ + ++ + LL F+Y
Sbjct: 261 AAHRLVLAARSPVFKAELFKPMEEGTTDVIKIDNMDAQVFKALLVFIY 308
>10_08_0059 + 14529885-14530991
Length = 368
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQ-EMFKMNPTQH---PIVFLKDVSHSALRDLLQFMY 388
+A H++VL+ SP F+ E+ P + ++ + D+ R LL +MY
Sbjct: 212 VAAHRVVLAARSPVFKAELLAGVPAKDGGGAVIQIDDMDAEVFRSLLHYMY 262
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +2
Query: 311 NPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTA----EQLQVXGLTGNQ 478
N T ++ L+D + D+L + ++NV+ +L+ I LQ+ G + +
Sbjct: 202 NLTSLTMLHLQDNRFTGTIDVLSDLPLTDLNVQNNQLSGAIPDKLKGISNLQISGNSFSN 261
Query: 479 NEESSTPSKPSRLRGQAPGR 538
+ S PS P Q+P R
Sbjct: 262 SPVSPAPSSPPSTTSQSPPR 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,237,095
Number of Sequences: 37544
Number of extensions: 285205
Number of successful extensions: 732
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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