Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0769
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 29 0.60
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 28 0.79
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C... 27 1.8
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 3.2
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 3.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.2
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.6
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 5.6
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 7.3
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 7.3
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 25 7.3
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.3
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 25 7.3
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 28.7 bits (61), Expect = 0.60
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = -2
Query: 319 LREILQKNTENIYQEVKYKHRKRSFYIIKYRKFNLTSFGIIIITAIGAELQNEGKDNLFF 140
LR + KN ENI K++ R + K RK+ + + G + ++ +
Sbjct: 935 LRALRHKNPENIPLLEKWEVRALHQLMAKIRKYYTVPTDYLSLRMDGLQAMLRKREYMSC 994
Query: 139 FFYKMIKYACIM 104
+ + YAC+M
Sbjct: 995 YTFNYFDYACLM 1006
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 28.3 bits (60), Expect = 0.79
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = -2
Query: 484 EVCKPLRLDTSLCIQDPFDHSRNCSVNIYPKLVTRIVDLFKSAAETFHKDKKPNFLREIL 305
E +PL +D + I + HS +I KL ++ F AET + L +L
Sbjct: 1569 ERLQPLYVDAATAIANTGAHSAYDCYDILSKL--HAINDFSRIAET--DGIVSDNLDIVL 1624
Query: 304 QKNTENIYQEVKYKHRKRSFYIIKYRKFNLT 212
++ + K+KH+ S +++ Y KF T
Sbjct: 1625 RRRLSQVAPYGKFKHQILSTHLVGYEKFENT 1655
>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +2
Query: 131 VEKKKQIIFSLVLQFCPYCGY-----NDYSERR*IELSVLYYVKTSFSMF 265
+E K I S++LQ+C Y Y ND + S+LY T+ + F
Sbjct: 103 LEVSKHIPGSILLQYCMYAAYHCLGNNDLDSAKVWYFSILYIPTTTLTSF 152
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/85 (23%), Positives = 42/85 (49%)
Frame = -2
Query: 475 KPLRLDTSLCIQDPFDHSRNCSVNIYPKLVTRIVDLFKSAAETFHKDKKPNFLREILQKN 296
K + + SLCI++ D + + + L T +V + + A+ H D+ +LR++L K
Sbjct: 1147 KDFQQELSLCIENLLDSFLSKTNSYKIALNTVLVRICEEASRNEHSDQ---YLRKLLLKL 1203
Query: 295 TENIYQEVKYKHRKRSFYIIKYRKF 221
++Y + + K F + ++F
Sbjct: 1204 ITDLY--INHDITKECFLLWDMKQF 1226
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -3
Query: 357 LQKHFIRIKNLIS*EKFCRKI--RKIYIRKLNINIENEV 247
L K + RIK LI+ E+FC+ + +K+ +I IEN+V
Sbjct: 19 LDKRYKRIKRLINNEQFCKNVILQKLVDSTKDI-IENKV 56
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +2
Query: 239 YVKTSFSMFIFNFLIYIFRIFLQNFSQEIRFFILMKCFCSRFEKINYSGH*FGIYIDRAI 418
Y TSFS+ +LI +FR L E+R + + C + ++ S + ID I
Sbjct: 457 YFDTSFSLDFHVYLIGLFRKVLFACPVELRPEVYARMLCPLVKSLDKSSS--EVIIDEVI 514
Query: 419 S 421
S
Sbjct: 515 S 515
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +2
Query: 230 VLYYVKTSFSMFIFNFLIYIFRIFLQNFSQEIRFFILMKCFC 355
+L+++ SFS FL IF ++ +F F C C
Sbjct: 123 LLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVC 164
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 13 NNLFKKSVDYFTKYCK 60
N FKKS+ +F YCK
Sbjct: 66 NTFFKKSIFFFVYYCK 81
>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 400 YPKLVTRIVDLFKSAAETFHKDKKPNFLREILQKNTENI 284
+PK+ +I L AE + K+PN L I + E +
Sbjct: 49 FPKVERKIQSLLDELAEVLFQSKQPNDLTRIRKAIAEQL 87
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +2
Query: 224 LSVLYYVKTSF----SMFIFNFLIYIFRIFLQNFSQEI 325
L LYYV+T+ ++F F + RI+LQN Q I
Sbjct: 882 LYTLYYVETTGCDGDALFNLTFAYLLIRIYLQNGIQSI 919
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -2
Query: 370 LFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKHRKRSFYIIKYRKFNLTSFGIIII 191
LFK + HK KPNF + +T + + + + + ++RK T G I
Sbjct: 4 LFKRNKGSAHKPTKPNFSKTSTTPSTSQLKHSHESNVKMSTSTVTEHRK-KPTGSGSHIT 62
Query: 190 TAIGAELQNEGKDNL 146
+ ++L G N+
Sbjct: 63 ASPWSKLTVRGSSNV 77
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 7.3
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = -2
Query: 469 LRLDTSLCIQDPFDHSRN 416
+ ++ SLC+++PF+ +RN
Sbjct: 303 MEVNNSLCVEEPFNTARN 320
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 304 QKNTENIYQEVKYKHRKRSFYIIKYRK 224
+K T +++K+KH+K ++KY K
Sbjct: 81 KKKTYTTPKKIKHKHKKVELAVLKYYK 107
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 53 TVNRTHIGDNELNFRFNHNTSVFNHFVEK-KKQIIFSLVLQFCPYCGYND 199
T N THI D+ L F H++ + VEK + I L F YC D
Sbjct: 210 TKNYTHIFDSLLTFT-RHDSEDVSTSVEKLTSKKISELEKLFADYCSIED 258
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 304 QKNTENIYQEVKYKHRKRSFYIIKYRK 224
+K T +++K+KH+K ++KY K
Sbjct: 81 KKKTYTTPKKIKHKHKKVELAVLKYYK 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,685
Number of Sequences: 5004
Number of extensions: 46173
Number of successful extensions: 126
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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