Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0769
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35437| Best HMM Match : DUF1212 (HMM E-Value=1.5)                   32   0.27 
SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)                   30   1.4  
SB_57332| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_32737| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_25914| Best HMM Match : IL1_propep (HMM E-Value=8.1)                29   2.5  
SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)          29   3.3  
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)                     29   3.3  
SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.4  
SB_11265| Best HMM Match : LRR_1 (HMM E-Value=0.23)                    28   4.4  
SB_41296| Best HMM Match : RVT_1 (HMM E-Value=2.8e-24)                 27   7.6  
SB_30852| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   7.6  
SB_26585| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   7.6  
SB_6247| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_42310| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   7.6  
SB_30215| Best HMM Match : RVT_1 (HMM E-Value=2.6e-34)                 27   7.6  
SB_14841| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   7.6  
SB_8605| Best HMM Match : RVT_1 (HMM E-Value=0)                        27   7.6  
SB_3943| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_63| Best HMM Match : RVT_1 (HMM E-Value=0)                          27   7.6  

>SB_35437| Best HMM Match : DUF1212 (HMM E-Value=1.5)
          Length = 184

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -2

Query: 340 KDKKPNFLREILQKNTENIYQEVKYKHRKRSFYIIKYRKFNLTSFGIIIITAIGAELQNE 161
           +++    L EI +  +EN   E +   R+R   I K   F +T+FG+ + TAI A + + 
Sbjct: 62  RERNEERLSEIDELKSENRELENQKPLRERIKAIFKKYGFTVTAFGLAVATAIAAIVTSL 121

Query: 160 GK 155
           GK
Sbjct: 122 GK 123


>SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)
          Length = 993

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -2

Query: 388  VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKHRKR----SFYIIKYRKF 221
            + R++ LFK  A+    + +P  +  ++ K  ENI  E  Y H  +    S +   +RK 
Sbjct: 867  MARVLPLFKKGAKNIPDNYRPISILPVISKLMENIMFEQLYDHLIKNNILSEHQFGFRKL 926

Query: 220  NLTSFGIIIIT 188
            + T++ ++  T
Sbjct: 927  HSTTYALLDCT 937


>SB_57332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 397 PKLVTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKHRKR 251
           PKLV +++         FHK +KP+F+RE++   T  ++      H ++
Sbjct: 79  PKLVKQVL------LTNFHKYQKPDFVREVVPNLTSGLFTSAGSAHARQ 121


>SB_32737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 397 PKLVTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKHRKR 251
           PKLV +++         FHK +KP+F+RE++   T  ++      H ++
Sbjct: 248 PKLVKQVL------LTNFHKYQKPDFVREVVPNLTSGLFTSAGSAHARQ 290


>SB_25914| Best HMM Match : IL1_propep (HMM E-Value=8.1)
          Length = 131

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -2

Query: 388 VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKHRKR----SFYIIKYRKF 221
           + R++ +FK  A+    + +P  +  ++ K  ENI  E  Y H  +    S +   +RK 
Sbjct: 5   MARVLPIFKKGAKNIPDNYRPISILPVISKLMENIMFEQLYDHLIKNNILSEHQFGFRKL 64

Query: 220 NLTSFGIIIIT 188
           + T++ ++  T
Sbjct: 65  HSTTYALLDCT 75


>SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)
          Length = 1286

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 275  FLIYIFRIFLQNFSQEIRFFILMKCFCSRFEKINY 379
            + +Y  ++FL  F    RFFI ++ +  ++E I Y
Sbjct: 943  YRLYFEKLFLVQFQSFFRFFIALELYTHQYEDIVY 977


>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1855

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 388 VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKH 260
           + R++ LFK  A+    + +P  +  ++ K  ENI  E  Y H
Sbjct: 519 MARVLPLFKKGAKNIPDNYRPISIMPVISKLMENIMFEQLYDH 561


>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
          Length = 991

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 325 NFLREILQKNTENIYQEVKYKHRKRSFY 242
           NF R+I+ +N+EN   EV Y  R +SF+
Sbjct: 506 NFFRKIVGRNSENSSLEVLYFWRIKSFF 533


>SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 365

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 155 FSLVLQFCPYCGYNDYSERR*IELSVLYYVKTSFSMFIFNFLIYIFR--IFLQNFSQEIR 328
           FSLV  FC  C YN        ELS ++ +   +S    N  +Y FR   + + FS+  R
Sbjct: 273 FSLVSMFCTKCYYNAPE-----ELSTIFLI-LGYSNSAMNPYLYAFRNQKYKETFSKLFR 326

Query: 329 FFILMKCFCSRFEK 370
              ++  + S F +
Sbjct: 327 KLTIVSRYPSSFRR 340


>SB_11265| Best HMM Match : LRR_1 (HMM E-Value=0.23)
          Length = 174

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = +3

Query: 291 SVFFCKISLRKLGFLSL*NVSAADLKRSTILVT 389
           S++ C++ L  LG+ ++ NV+AAD+K   +L++
Sbjct: 36  SLYLCRLEL-DLGYNAITNVTAADMKGKEMLIS 67


>SB_41296| Best HMM Match : RVT_1 (HMM E-Value=2.8e-24)
          Length = 568

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 77  DNELNFRFNHNTSVFNHFVEKKKQI-IFSLVLQFCPYCGYNDYSER 211
           D++ N   +  ++V NHF+EK   +  FS+ L+  PY  + D S R
Sbjct: 99  DSDCNVLCDQYSTVLNHFIEKHAPVRTFSVTLR--PYSPWYDDSLR 142


>SB_30852| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 623

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 388 VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKH 260
           + R++ LFK  ++T   + +P  +  ++ K  E I  E  Y H
Sbjct: 179 MARVLPLFKKGSKTIPDNYRPISILPVISKLMEKIMYEQLYDH 221


>SB_26585| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 317

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 388 VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKH 260
           + R++ LFK  ++T   + +P  +  ++ K  E I  E  Y H
Sbjct: 5   MARVLPLFKKGSKTIPDNYRPISILPVISKLMEKIMYEQLYDH 47


>SB_6247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 388 VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKH 260
           + R++ LFK  ++T   + +P  +  ++ K  E I  E  Y H
Sbjct: 423 MARVLPLFKKGSKTIPDNYRPISILPVISKLMEKIMYEQLYDH 465


>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -2

Query: 391 LVTRIVDLFKSAAETFHKDKKPNFLREILQKNTENI-YQEVKYKHRKRS 248
           +V +++ +FK+        K+P+FLR+  +K+ E   ++++  + RKR+
Sbjct: 228 VVEKVLRIFKAEVADLCSRKQPSFLRKRTKKDLEEFDFEKLCQEWRKRA 276


>SB_42310| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 940

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 388 VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKH 260
           + R++ LFK  ++T   + +P  +  ++ K  E I  E  Y H
Sbjct: 489 MARVLPLFKKGSKTIPDNYRPISILPVISKLMEKIMYEQLYDH 531


>SB_30215| Best HMM Match : RVT_1 (HMM E-Value=2.6e-34)
          Length = 875

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 388 VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKH 260
           + R++ LFK  ++T   + +P  +  ++ K  E I  E  Y H
Sbjct: 179 MARVLPLFKKGSKTIPDNYRPISILPVISKLMEKIMYEQLYDH 221



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 388 VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKH 260
           + R++ LFK  ++T   + +P  +  ++ K  E I  E  Y H
Sbjct: 468 MARVLPLFKKGSKTIPDNYRPISILPVISKLMEKIMYEQLYDH 510


>SB_14841| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1821

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 388  VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKH 260
            + R++ LFK  ++T   + +P  +  ++ K  E I  E  Y H
Sbjct: 1370 MARVLPLFKKGSKTIPDNYRPISILPVISKLMEKIMYEQLYDH 1412


>SB_8605| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 284

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 388 VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKH 260
           + R++ LFK  ++T   + +P  +  ++ K  E I  E  Y H
Sbjct: 5   MARVLPLFKKGSKTIPDNYRPISILPVISKLMEKIMYEQLYDH 47


>SB_3943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1457

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 388 VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKH 260
           + R++ LFK  ++T   + +P  +  ++ K  E I  E  Y H
Sbjct: 686 MARVLPLFKKGSKTIPDNYRPISILPVISKLMEKIMYEQLYDH 728


>SB_63| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 680

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 388 VTRIVDLFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKH 260
           + R++ LFK  ++T   + +P  +  ++ K  E I  E  Y H
Sbjct: 229 MARVLPLFKKGSKTIPDNYRPISILPVISKLMEKIMYEQLYDH 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,315,242
Number of Sequences: 59808
Number of extensions: 290500
Number of successful extensions: 864
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)