Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0769
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.67 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.67 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.2  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.2  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   8.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 235 LLCKNFVFYVYI*LPDIYFPYF 300
           ++C+NF + +Y  L   Y P F
Sbjct: 195 VVCQNFFYQIYATLGSFYIPLF 216


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 486 LKYANHCDWTPPYVYK 439
           LKY     W PP +YK
Sbjct: 140 LKYTGDVSWKPPAIYK 155


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 486 LKYANHCDWTPPYVYK 439
           L Y    +W PP +YK
Sbjct: 131 LNYTGRVEWKPPAIYK 146


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 349 TFHKDKKPNFLREILQKNTENIYQEVKYKHRKR 251
           T  + + P      +++ TE +Y+E+  +H+KR
Sbjct: 125 TLQRAEYPTNRSLFIREQTEEMYREMLLEHKKR 157


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 245 LHNKVQKVQFNVFRNNHYNRN 183
           L N  +   +N + NN+YN N
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNN 105


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 245 LHNKVQKVQFNVFRNNHYNRN 183
           L N  +   +N + NN+YN N
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNN 105


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 245 LHNKVQKVQFNVFRNNHYNRN 183
           L N  +   +N + NN+YN N
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNN 105


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 245 LHNKVQKVQFNVFRNNHYNRN 183
           L N  +   +N + NN+YN N
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNN 105


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 461 QSQWFAYFSGQHYVDIGKIC 520
           +S WF Y     +V  G+IC
Sbjct: 496 KSDWFDYSEVSKWVQKGQIC 515


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 486 LKYANHCDWTPPYVYK 439
           L Y     WTPP ++K
Sbjct: 127 LHYTGKVLWTPPAIFK 142



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 429 SNGSCIHKEVSSRNGLHTSAGN 494
           S  S  H+ +   NGLHT+  +
Sbjct: 393 SPDSARHQRIGGCNGLHTTTAH 414


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 245 LHNKVQKVQFNVFRNNHYNRNRGR 174
           LHN+ +K+       N Y+R+R R
Sbjct: 22  LHNEKEKLLEERTSRNRYSRSRER 45


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 245 LHNKVQKVQFNVFRNNHYNRNRGR 174
           LHN+ +K+       N Y+R+R R
Sbjct: 22  LHNEKEKLLEERTSRNRYSRSRER 45


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 245 LHNKVQKVQFNVFRNNHYNRNRGR 174
           LHN+ +K+       N Y+R+R R
Sbjct: 22  LHNEKEKLLEERTSRNRYSRSRER 45


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 245 LHNKVQKVQFNVFRNNHYNRNRGR 174
           LHN+ +K+       N Y+R+R R
Sbjct: 22  LHNEKEKLLEERTSRNRYSRSRER 45


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 245 LHNKVQKVQFNVFRNNHYNRNRGR 174
           LHN+ +K+       N Y+R+R R
Sbjct: 22  LHNEKEKLLEERTSRNRYSRSRER 45


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 245 LHNKVQKVQFNVFRNNHYNRNRGR 174
           LHN+ +K+       N Y+R+R R
Sbjct: 22  LHNEKEKLLEERTSRNRYSRSRER 45


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 245 LHNKVQKVQFNVFRNNHYNRNRGR 174
           LHN+ +K+       N Y+R+R R
Sbjct: 22  LHNEKEKLLEERTSRNRYSRSRER 45


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +3

Query: 297 FFCKISLRKLGFLSL*NVSAADLKRSTILVTNLGYILTEQF 419
           F+    +    +L   N+   DLK   +L+ + GY+    F
Sbjct: 470 FYTACVVEAFDYLHSRNIIYRDLKPENLLLDSQGYVKLVDF 510


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 357 LQKHFIRIKNLIS*EKFCRKIRKI 286
           L+KH I  K ++  ++   K RKI
Sbjct: 432 LEKHLIEYKKMLKIKRLFGKDRKI 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,486
Number of Sequences: 438
Number of extensions: 3369
Number of successful extensions: 22
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)