Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0769
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26620.1 68415.m03194 glycoside hydrolase family 28 protein /... 33 0.13
At2g15470.1 68415.m01769 glycoside hydrolase family 28 protein /... 31 0.67
At2g15460.1 68415.m01768 glycoside hydrolase family 28 protein /... 31 0.67
At2g15450.1 68415.m01767 glycoside hydrolase family 28 protein /... 31 0.67
At2g45620.1 68415.m05672 nucleotidyltransferase family protein l... 29 1.5
At1g50360.1 68414.m05645 myosin family protein contains Pfam pro... 29 2.7
At4g30990.1 68417.m04398 expressed protein ; expression supporte... 28 4.7
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ... 27 6.2
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ... 27 6.2
At1g27020.1 68414.m03294 expressed protein 27 6.2
At3g16320.1 68416.m02061 cell division cycle family protein / CD... 27 8.3
>At2g26620.1 68415.m03194 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 402
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 529 LFLTNFPYINIMLPAEVCKPLRLDTSLCIQDPFDHSRNCSVNI 401
+ ++NF Y NI + +V KP+ +D C P +H R V I
Sbjct: 291 ILVSNFVYENIQM-IDVGKPINIDQKYCPHPPCEHERKSHVQI 332
>At2g15470.1 68415.m01769 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 404
Score = 30.7 bits (66), Expect = 0.67
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 529 LFLTNFPYINIMLPAEVCKPLRLDTSLCIQDPFDHSR 419
+ ++NF Y NI + +V KP+ +D C P +H R
Sbjct: 291 ILVSNFVYENIQM-IDVGKPINIDQKYCPHPPCEHER 326
>At2g15460.1 68415.m01768 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 402
Score = 30.7 bits (66), Expect = 0.67
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 529 LFLTNFPYINIMLPAEVCKPLRLDTSLCIQDPFDHSR 419
+ ++NF Y NI + +V KP+ +D C P +H R
Sbjct: 291 ILVSNFVYENIQM-IDVGKPINIDQKYCPHPPCEHER 326
>At2g15450.1 68415.m01767 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 404
Score = 30.7 bits (66), Expect = 0.67
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 529 LFLTNFPYINIMLPAEVCKPLRLDTSLCIQDPFDHSR 419
+ ++NF Y NI + +V KP+ +D C P +H R
Sbjct: 291 ILVSNFVYENIQM-IDVGKPINIDQKYCPHPPCEHER 326
>At2g45620.1 68415.m05672 nucleotidyltransferase family protein low
similarity to SP|O13833| Caffeine-induced death protein
1 {Schizosaccharomyces pombe}; contains Pfam profiles
PF03828: PAP/25A associated domain, PF01909:
Nucleotidyltransferase domain
Length = 764
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 451 LCIQDPFDHSRNCSVNIYPKLVTRIV-DLFKSAAETFHKDKKP 326
+CI+DPF+ S + + K R++ + F+ AA H+D P
Sbjct: 704 ICIEDPFETSHDLG-RVVDKFSIRVLREEFERAARIMHQDPNP 745
>At1g50360.1 68414.m05645 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1153
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 427 HSRNCSVNIYPKLVTRIVDLFKSAAETFHKDKKPNFLREILQKNTE-NIYQEVKYKHRKR 251
H R+ SV + +++R+ + F A+ F D+K FL E+ E N+ + + + K+
Sbjct: 1048 HGRSRSVGVGLSVISRLAEEFGQRAQVFGDDRK--FLMEVKSGQVEANLNPDRELRRLKQ 1105
Query: 250 SF 245
F
Sbjct: 1106 MF 1107
>At4g30990.1 68417.m04398 expressed protein ; expression supported by
MPSS
Length = 2138
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 304 QKNTENIYQEVKYKHRKRSFYIIKYRKFNLT--SFGIIIITAIGAELQNEGKDNLFFFFY 131
QK E ++K +++SF +K N+T S G+ +++ + A+LQ +
Sbjct: 1713 QKEVEKFASKMKETRKRKSFETLKLIAENVTFRSHGLKLLSPVTAQLQRHLTPKIKTNLE 1772
Query: 130 KMIK 119
KM+K
Sbjct: 1773 KMLK 1776
>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203;
contains Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 481 VCKPLRLDT-SLCIQDPFDHSRNCSVNIYPKLVTRIVDLFKSAAE 350
V PL L S C +DP + R C+ N PKL ++ SA E
Sbjct: 8 VIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIE 52
>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203;
contains Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 481 VCKPLRLDT-SLCIQDPFDHSRNCSVNIYPKLVTRIVDLFKSAAE 350
V PL L S C +DP + R C+ N PKL ++ SA E
Sbjct: 8 VIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIE 52
>At1g27020.1 68414.m03294 expressed protein
Length = 308
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = -2
Query: 367 FKSAAETFHKDKKPNFLREILQKN--TENIYQEVK-YKHRKRSFYIIKYRKFNLTSFGI 200
FK +ETF ++ + L+ L+KN + I++ VK + K S+ +R F + +GI
Sbjct: 12 FKGGSETFLQNVFESILKTYLRKNPMAKTIWELVKSVDNEKISYDHFFFRTFKVDGYGI 70
>At3g16320.1 68416.m02061 cell division cycle family protein / CDC
family protein similar to SP|P30260|CC27_HUMAN Protein
CDC27Hs (Cell division cycle protein 27 homolog) Homo
sapiens, C-terminus similar to C-term of cell division
control protein 27 SP:P38042 (Saccharomyces cerevisiae);
contains Pfam profile PF00515 TPR Domain
Length = 727
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 242 VKTSFSMFIFNFLIYIFRIFLQNFSQEIRFFILMKCFCS 358
V+ + + F+F I++ + L F E+ +L +C+ S
Sbjct: 9 VQKNLNHFMFTNAIFLCELLLAQFPSEVNLQLLARCYLS 47
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,893,707
Number of Sequences: 28952
Number of extensions: 216361
Number of successful extensions: 515
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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