Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0763
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    29   0.68 
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    27   2.7  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   6.3  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 230 QLHMTTGTQNALTSIXKANHFFCIFKDA 313
           + H TTGT N   SI +  H++ +F+ A
Sbjct: 630 ETHDTTGTSNFAVSIQQEKHYYPVFQPA 657


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 369 VEARLIKVHLKSKTLNINEASLNIQKK 289
           V    +++ L  KTL IN A+LNI+++
Sbjct: 358 VNHECVQLALNKKTLQINNATLNIEER 384


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 106 CGNAQLGYVLCSRVLTEVGLQRR*CRSIIKL*I*FKNNTRASIAY 240
           C N+   +VLC ++   +G Q +   S +++   ++ NT + IA+
Sbjct: 708 CSNSLFYFVLCMQLEESIGTQEQRLLSFLRV---YEKNTLSEIAH 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,259
Number of Sequences: 5004
Number of extensions: 33029
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)