Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0763
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0138 + 14168422-14168682                                         30   1.6  
01_01_1008 - 7987936-7988628,7988923-7989102                           29   2.1  
07_03_0492 + 18712145-18712429,18712541-18712669,18712812-18713396     28   4.9  
05_04_0214 - 19111493-19112413,19112674-19112750,19113843-191144...    28   6.5  
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    28   6.5  
01_05_0654 + 23965868-23967718                                         27   8.6  

>12_02_0138 + 14168422-14168682
          Length = 86

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -2

Query: 477 WWRRAGVARRYSVGGGGQHYTIGRRW 400
           WWR A  A R   GGGG     GRRW
Sbjct: 22  WWRTAWAAGRIDGGGGGDGG--GRRW 45


>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 498 RRARCSDWWRRAG---VARRYSVGGGGQ 424
           RR   S WWRR G   V RR   GGGG+
Sbjct: 224 RRCSRSPWWRRRGEARVRRRGRRGGGGE 251


>07_03_0492 + 18712145-18712429,18712541-18712669,18712812-18713396
          Length = 332

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 18  ETLTD-IQYFNY*TVRLQKLTFVDGSYTIRLWECSARVRAVFTSAHRGRPPTTLMPLY 188
           E++TD I +F    + +  L  + G++TI    C+A    ++  A  GRP  ++ P Y
Sbjct: 170 ESVTDLIAFFESRGLTVLDLAVLSGAHTIGRATCAAVKPRLWDYAGTGRPDASMSPRY 227


>05_04_0214 -
           19111493-19112413,19112674-19112750,19113843-19114412,
           19114605-19114754,19115499-19115643
          Length = 620

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 367 DRHSFKLARVRPPPADSVVLPAATDAVATRD 459
           D  +  LA V PPP  +V LPAA      RD
Sbjct: 157 DHLAAALAAVAPPPPPAVQLPAAPAQAGNRD 187


>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 471 RRAGVARRYSVGGGGQHYTIGRRWSDSCELKAMSVE 364
           RRA  A   S GGGG H+   R  S   E +A++VE
Sbjct: 193 RRAHRAATSSSGGGGGHHASLRGLSGCYECRAINVE 228


>01_05_0654 + 23965868-23967718
          Length = 616

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 486 SERDAGPPSGAVVGADAAANIFNCC 560
           +ERDA P +   VG +A A++  CC
Sbjct: 61  AERDACPAAVVSVGPEAYASLLQCC 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,965,419
Number of Sequences: 37544
Number of extensions: 241792
Number of successful extensions: 893
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)