Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0763
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24207| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)          28   6.6  
SB_38463| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-17)         27   8.7  

>SB_24207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 212 RTIPEHQLHMTTGTQNALTSIXKANHFFCIFKDASLILSVLDFKCTLISRASTDI 376
           +++  HQ  +T+  QN+ TSI + N    I    +L L+V+ F C  +  A  DI
Sbjct: 210 KSVRSHQARVTSMKQNSNTSICRPN-IQDIKITHTLFLTVIGFVCCWVPIAVIDI 263


>SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)
          Length = 580

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 230 QLHMTTGTQNALTSIXKANHFFCIFKDASLILSVLDFKCTLISRASTDIA 379
           Q   +TGT + L +  KA   FC++ D + + + +D  C  +   S  IA
Sbjct: 268 QAAYSTGTYSNLKTQFKAFFLFCLYFDLTPLPADIDTVCLYVQFLSRSIA 317


>SB_38463| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-17)
          Length = 828

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 117 SIPTIVSCRSHRQTLISAVAQFNN 46
           +IPT++SCRSH+    + V   NN
Sbjct: 213 TIPTVISCRSHKPQSPNNVRNPNN 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,568,138
Number of Sequences: 59808
Number of extensions: 261269
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)