Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0763
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    27   0.18 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    27   0.18 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    27   0.18 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    26   0.24 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.2  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 462 QPAATSRYSERDAGPPSGAVVGADAAANIFNC 557
           +P       +R+ GPP+GA  G +      NC
Sbjct: 399 RPGENPVTQKREGGPPTGATTGPNEIVTCTNC 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 462 QPAATSRYSERDAGPPSGAVVGADAAANIFNC 557
           +P       +R+ GPP+GA  G +      NC
Sbjct: 419 RPGENPVTQKREGGPPTGATTGPNEIVTCTNC 450


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 462 QPAATSRYSERDAGPPSGAVVGADAAANIFNC 557
           +P       +R+ GPP+GA  G +      NC
Sbjct: 368 RPGENPVTQKREGGPPTGATTGPNEIVTCTNC 399


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 489 ERDAGPPSGAVVGADAAANIFNC 557
           +R+ GPP+GA  G +      NC
Sbjct: 394 KREGGPPTGATTGPNEIVTCTNC 416


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 569 DWTTAVKYISGGVRSNNS 516
           +W    KY+SG +R N S
Sbjct: 554 EWVRVGKYLSGELRLNMS 571


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 47  LLNCATAEINVCRW 88
           LL CAT+  +  RW
Sbjct: 768 LLQCATSNYSTTRW 781


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,062
Number of Sequences: 438
Number of extensions: 2188
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)