Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0763
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27480.1 68415.m03321 calcium-binding EF hand family protein ...    29   1.8  
At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family pr...    27   7.2  

>At2g27480.1 68415.m03321 calcium-binding EF hand family protein
           similar to SP|P12815 Programmed cell death protein 6
           (Probable calcium-binding protein ALG-2) {Mus musculus};
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 186

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 57  VRLQKLTFVDGSYTIRLWECSARVRAVFTSAHRGR 161
           +RL K T+    Y + LW C A+ RA+F    R R
Sbjct: 62  LRLGKFTYCPKEY-VELWNCLAQWRAIFNRYDRDR 95


>At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 458

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 477 SRYSERDAGPPSGAVVGADAAANIFNCCSPVAEQKEFHM 593
           S +S+ +  PP   V+ A + +N  NC   V E  EFH+
Sbjct: 27  SSFSQAEPPPPPPQVLVAGSTSNS-NCSVEVEELSEFHL 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,688,083
Number of Sequences: 28952
Number of extensions: 176488
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)