Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0756
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    75   1e-14
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    28   1.1  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    28   1.5  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    27   3.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   6.0  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   6.0  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   6.0  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   7.9  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 34/48 (70%), Positives = 41/48 (85%)
 Frame = +3

Query: 111 AVIKNADMSEEMQQDAVDCATQALEKFNIEKXIAAFIKKEFDKKYNPT 254
           AVIK  DMSE+MQQ+A+  A QA+EKF IEK IAAFIK+EFDKK++PT
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPT 49



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQVGY 343
           HCIVGRNFGS+VTHE+RHFIYFYLG V +
Sbjct: 51  HCIVGRNFGSFVTHESRHFIYFYLGTVAF 79


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 370 MV*PLLKSSIAHLSQVEVDEVASLVCHI 287
           M+ PL+KS     S+V +DEV SLVC +
Sbjct: 493 MLCPLVKSLDKSSSEVIIDEVISLVCDL 520


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 527 FTPALACLPPATLWLLATYGNVPQPEPRMRICK 429
           F P  +C     +W+ A YGN P+ + R  +C+
Sbjct: 119 FYPCWSCAEDLRIWM-AKYGNSPRVDSRESLCE 150


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 439 LMRGSGCGTFP*VASSXSVAGGRQASAGVNGSRVSAXVG 555
           LM     GT+P V SS +  GG     GV   R++  +G
Sbjct: 235 LMLDLDFGTYPFVTSSNTTVGGVCTGLGVPPQRIANSIG 273


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 415 SDGXPLQILMRGSGCGTFP*VASSXSVAGGRQASAGVNGSRVSAXVGAQFS 567
           ++G P+         G  P  AS   + GG   SAG   +  +A VGA  S
Sbjct: 325 TNGRPVAPRPSAGAGGANPPAASQPGLLGGSSNSAGPIAAATAAGVGADAS 375


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 72  KQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE 200
           +QKQ + +   RK   K   M+E+ +    +   + L K N+E
Sbjct: 527 QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVE 569


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 183 RALELHSQQHLAASLRSCQHSL*LLCDHTSCL-GFVFAS 70
           ++L L + QH+   L SC ++L +L  H  CL  F++ S
Sbjct: 39  KSLHLMTSQHIFKCLSSCNYALSIL--HNICLASFLYLS 75


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 411 YCVRC*QKNRSDAKWSNRS 355
           YC+RC   ++ D+ W++RS
Sbjct: 539 YCLRCVYDDKMDSLWNSRS 557


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +3

Query: 75  QKQTQD--KMCDRKAVIKNADMSEEMQQDAVDCATQALEKF 191
           +K+T +  KM   K ++K AD+S  +Q+D +   T+ LEK+
Sbjct: 521 EKKTDEPVKMRKVKKLVKVADLSVSVQEDRL--PTEVLEKY 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,873
Number of Sequences: 5004
Number of extensions: 49287
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)