Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0756
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)               101   7e-22
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.014
SB_46777| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=2.1)            30   2.1  
SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)
          Length = 89

 Score =  101 bits (241), Expect = 7e-22
 Identities = 58/94 (61%), Positives = 66/94 (70%), Gaps = 5/94 (5%)
 Frame = +3

Query: 96  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKXIAAFIKKEFDKKYNPTGIASWVV 275
           M +RKAVIKNADM+E+MQ DA++CATQALEKFNIEK IAAFIKKEFDKKYNPT    W  
Sbjct: 1   MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPT----WHC 56

Query: 276 ILARM*HTRLATSSTSTW-----DRWAILLFKSG 362
           I+ R       T  T  +      + AILLFKSG
Sbjct: 57  IVGRN-FGSYVTHETKHFIYFYLGQVAILLFKSG 89


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +3

Query: 114 VIKNADMSEEMQQDAVDCATQALEKF-NIEKXIAAFIKKEFDKKYNPTGIASWVVIL 281
           +I+ +DM++EM+ +A++    A EKF N  +  A  IK+  DKK+     ASW  ++
Sbjct: 26  LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFG----ASWHAVV 78



 Score = 34.7 bits (76), Expect = 0.073
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQVGYTAL 352
           H +VG  FG  +THE R+ +Y + G+  YT +
Sbjct: 75  HAVVGEGFGFEITHEVRNLLYMFFGK--YTTI 104


>SB_46777| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=2.1)
          Length = 519

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -1

Query: 533 EPFTPALA-CLPPATLWLLATYGNVPQPEPRMRIC-KGYPSDNTASAANKKIEVMLNGLT 360
           EP  PAL+  LPP  L  + T     + +  ++I  K  P D TAS A+   ++ +N LT
Sbjct: 439 EP-APALSEILPPIILPRIYTQQRAKEMKKEVKIAPKPIPGDRTASRASSHTQIDVNKLT 497

Query: 359 A-LKE 348
             LKE
Sbjct: 498 KNLKE 502


>SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 467 NVPQPEPRMRICKGYPSDNTASAANKKIEVMLNGLT 360
           N P  EP + +  G P DNT  ++  KI V  NG +
Sbjct: 7   NRPVHEP-LAVLSGVPKDNTIPSSAPKISVSKNGFS 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,284,953
Number of Sequences: 59808
Number of extensions: 392030
Number of successful extensions: 861
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)