Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0754
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac...    26   2.4  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   4.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   5.5  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    24   7.2  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    24   9.5  

>SPBC21B10.12 |rec6||meiotic recombination protein
           Rec6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 344 LMVKLIYKPYSKHLYSILR*KSTMEYQIEIYVKI 243
           + V+LI++ + KH+ SIL  +  + +Q   Y K+
Sbjct: 7   MAVELIHEAFLKHIVSILSKECPLSFQPSYYSKM 40


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 116 YNYIPYYIFDSNQFVYFQHY 57
           +NY+PYYI    + +Y  HY
Sbjct: 650 FNYLPYYIM--GRVLYVHHY 667


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 99  LHFRFKPVCLFSTLLRRKLHKCTNI 25
           + F   P  +F TLL  KL  C NI
Sbjct: 116 IDFTSLPCLIFETLLNPKLFTCKNI 140


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
            Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 161  EYKYKIDTFLSIHTNYNYIPYYIFDS 84
            +Y + +DT LSI   Y     YIF S
Sbjct: 930  DYNFYVDTILSIIKKYGGKRKYIFSS 955


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 179 AVKHKNEYKYKIDTFLSIHTNYNY 108
           A K KN +KY ID F +    Y Y
Sbjct: 434 ADKFKNHHKYDIDEFYNPSGIYRY 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,167
Number of Sequences: 5004
Number of extensions: 22960
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)